An Ultra-Fast All-in-One FASTQ preprocessor
Introduction | Installation | FastQ Quality Control with rfastp | a normal QC run for single-end fastq file. | a normal QC run for paired-end fastq files. | merge paired-end fastq files after QC. | UMI processing | a normal UMI processing for 10X Single-Cell library. | Set a customized UMI prefix and location in sequence name. | A QC example with customized cutoffs and adapter sequence. | multiple input files for read1/2 in a vector. | concatenate multiple fastq files. | catfastq concatenate all the input files into a new file. | Generate report tables/plots | A data frame for the summary. | a ggplot2 object of base quality plot. | a ggplot2 object of GC Content plot. | a data frame for the trimming summary. | Miscellaneous helper functions | Acknowledgments | Session info | References
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