Package: Rfastp 1.23.0

Wei Wang

Rfastp: An Ultra-Fast and All-in-One Fastq Preprocessor (Quality Control, Adapter, low quality and polyX trimming) and UMI Sequence Parsing).

Rfastp is an R wrapper of fastp developed in c++. fastp performs quality control for fastq files. including low quality bases trimming, polyX trimming, adapter auto-detection and trimming, paired-end reads merging, UMI sequence/id handling. Rfastp can concatenate multiple files into one file (like shell command cat) and accept multiple files as input.

Authors:Wei Wang [cre, aut], Ji-Dung Luo [ctb], Thomas Carroll [aut]

Rfastp_1.23.0.tar.gz
Rfastp_1.23.0.zip(r-4.7)Rfastp_1.23.0.zip(r-4.6)Rfastp_1.23.0.zip(r-4.5)
Rfastp_1.23.0.tgz(r-4.6-x86_64)Rfastp_1.23.0.tgz(r-4.6-arm64)Rfastp_1.23.0.tgz(r-4.5-x86_64)Rfastp_1.23.0.tgz(r-4.5-arm64)
Rfastp_1.23.0.tar.gz(r-4.7-arm64)Rfastp_1.23.0.tar.gz(r-4.7-x86_64)Rfastp_1.23.0.tar.gz(r-4.6-arm64)Rfastp_1.23.0.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
card.svg |card.png
Rfastp/json (API)

# Install 'Rfastp' in R:
install.packages('Rfastp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On BioConductor:Rfastp-1.23.0(bioc 3.24)Rfastp-1.22.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

qualitycontrolsequencingpreprocessingsoftwarezlibcpp

4.53 score 56 scripts 411 downloads 5 exports 25 dependencies

Last updated from:e419718a58. Checks:5 WARNING, 7 NOTE, 1 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING192
linux-devel-arm64NOTE198
linux-devel-x86_64NOTE219
source / vignettesOK266
linux-release-arm64NOTE194
linux-release-x86_64NOTE206
macos-release-arm64WARNING174
macos-release-x86_64WARNING416
macos-oldrel-arm64WARNING171
macos-oldrel-x86_64WARNING326
windows-develNOTE213
windows-releaseNOTE206
windows-oldrelNOTE174
wasm-releaseFAIL216

Exports:catfastqcurvePlotqcSummaryrfastptrimSummary

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecyclemagrittrplyrR6RColorBrewerRcppreshape2RhtslibrjsonrlangS7scalesstringistringrvctrsviridisLitewithr

An Ultra-Fast All-in-One FASTQ preprocessor

Wei Wang [email protected]

Rendered fromRfastp.Rmdusingknitr::rmarkdownon May 20 2026.

Last update: 2020-10-01
Started: 2020-06-18