Package: RTNduals 1.31.0
Mauro Castro
RTNduals: Analysis of co-regulation and inference of 'dual regulons'
RTNduals is a tool that searches for possible co-regulatory loops between regulon pairs generated by the RTN package. It compares the shared targets in order to infer 'dual regulons', a new concept that tests whether regulators can co-operate or compete in influencing targets.
Authors:
RTNduals_1.31.0.tar.gz
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RTNduals_1.31.0.tgz(r-4.4-any)RTNduals_1.31.0.tgz(r-4.3-any)
RTNduals_1.31.0.tar.gz(r-4.5-noble)RTNduals_1.31.0.tar.gz(r-4.4-noble)
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RTNduals.pdf |RTNduals.html✨
RTNduals/json (API)
NEWS
| # Install 'RTNduals' in R: |
| install.packages('RTNduals', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RTNduals-1.31.0(bioc 3.21)RTNduals-1.30.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
generegulationgeneexpressionnetworkenrichmentnetworkinferencegraphandnetwork
Last updated 25 days agofrom:2df8a76f99. Checks:OK: 5 WARNING: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | OK | Oct 31 2024 |
| R-4.5-linux | OK | Oct 31 2024 |
| R-4.4-win | OK | Oct 31 2024 |
| R-4.4-mac | WARNING | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | WARNING | Oct 31 2024 |
Exports:mbrAssociationmbrGetmbrPlotDualsmbrPlotInteractionmbrPriorEvidenceTabletni2mbrPreprocess
Dependencies:abindaskpassbackportsbase64encBiobaseBiocGenericsbootbroombslibcachemcarcarDataclassclicolorspacecowplotcpp11crayoncrosstalkcurldata.tableDelayedArrayDerivdigestdoBydplyre1071evaluatefansifarverfastmapfontawesomeFormulafsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphinfotheoIRangesisobandjquerylibjsonlitekernlabKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalme4magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmicrobenchmarkmimeminetminqamixtoolsmodelrmunsellnlmenloptrnnetnumDerivopensslpbkrtestpheatmappillarpkgconfigplotlypromisesproxypurrrpwrquantregR6rappdirsRColorBrewerRcppRcppEigenRedeRrlangrmarkdownRTNS4ArraysS4VectorssassscalessegmentedsnowSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviperviridisLitewithrxfunXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| RTNduals: An R/Bioconductor package for analysis of co-regulation and inference of 'dual regulons'. | RTNduals-package RTNduals |
| MBR objects | MBR MBR-class |
| Motifs analysis and inference of 'dual regulons'. | mbrAssociation mbrAssociation,MBR-method |
| Get information from individual slots in MBR object. | mbrGet mbrGet,MBR-method |
| Plot shared targets between regulons. | mbrPlotDuals |
| Plot interaction effects between two continuous variables. | mbrPlotInteraction |
| Entry point for external evidences. | mbrPriorEvidenceTable mbrPriorEvidenceTable,MBR-method |
| A preprocessing function for objects of class MBR. | tni2mbrPreprocess tni2mbrPreprocess,TNI-method |
