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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "RTNduals" in publications use:'
type: software
license: Artistic-2.0
title: 'RTNduals: Analysis of co-regulation and inference of ''dual regulons'''
version: 1.29.0
doi: 10.1093/bioinformatics/btz534
abstract: RTNduals is a tool that searches for possible co-regulatory loops between
  regulon pairs generated by the RTN package. It compares the shared targets in order
  to infer 'dual regulons', a new concept that tests whether regulators can co-operate
  or compete in influencing targets.
authors:
- family-names: Castro
  given-names: Mauro
  email: mauro.a.castro@gmail.com
- family-names: Groeneveld
  given-names: Clarice
  email: clari.groeneveld@gmail.com
- family-names: Chagas
  given-names: Vinicius S.
- family-names: Groeneveld
  given-names: Clarice S.
- family-names: Robertson
  given-names: Gordon
- family-names: Meyer
  given-names: Kerstin B.
- family-names: Castro
  given-names: Mauro A. A.
preferred-citation:
  type: article
  title: 'RTNsurvival: an R/Bioconductor package for regulatory network survival analysis.'
  authors:
  - family-names: Chagas
    given-names: Vinicius
  - family-names: Groeneveld
    given-names: Clarice
    email: clari.groeneveld@gmail.com
  - family-names: Oliveira
    given-names: Kelin
  - family-names: Trefflich
    given-names: Sheyla
  - family-names: Almeida
    given-names: Rodrigo
    name-particle: de
  - family-names: Ponder
    given-names: Bruce
  - family-names: Meyer
    given-names: Kerstin
  - family-names: Jones
    given-names: Steven
  - family-names: Robertson
    given-names: Gordon
  - family-names: Castro
    given-names: Mauro
    email: mauro.a.castro@gmail.com
  journal: Bioinformatics
  year: '2019'
  doi: 10.1093/bioinformatics/btz534
  start: btz534
repository: https://bioc.r-universe.dev
contact:
- family-names: Castro
  given-names: Mauro
  email: mauro.a.castro@gmail.com
- family-names: Groeneveld
  given-names: Clarice
  email: clari.groeneveld@gmail.com
references:
- type: article
  title: Regulators of genetic risk of breast cancer identified by integrative network
    analysis.
  authors:
  - family-names: Castro
    given-names: Mauro
  - family-names: Santiago
    given-names: Ines
    name-particle: de
  - family-names: Campbell
    given-names: Thomas
  - family-names: Vaughn
    given-names: Courtney
  - family-names: Hickey
    given-names: Theresa
  - family-names: Ross
    given-names: Edith
  - family-names: Tilley
    given-names: Wayne
  - family-names: Markowetz
    given-names: Florian
  - family-names: Ponder
    given-names: Bruce
  - family-names: Meyer
    given-names: Kerstin
  journal: Nature Genetics
  year: '2016'
  volume: '48'
  doi: 10.1038/ng.3458
  start: '33'