Package: RNAseq123 1.37.0

Matthew Ritchie

RNAseq123: RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

R package that supports the F1000Research workflow article on RNA-seq analysis using limma, Glimma and edgeR by Law et al. (2016).

Authors:Charity Law, Monther Alhamdoosh, Shian Su, Xueyi Dong, Luyi Tian, Gordon Smyth and Matthew Ritchie

RNAseq123_1.37.0.tar.gz
RNAseq123_1.37.0.zip(r-4.7-any)RNAseq123_1.37.0.zip(r-4.6-any)RNAseq123_1.37.0.zip(r-4.5-any)
RNAseq123_1.37.0.tgz(r-4.6-any)RNAseq123_1.37.0.tgz(r-4.5-any)
RNAseq123_1.37.0.tar.gz(r-4.7-any)RNAseq123_1.37.0.tar.gz(r-4.6-any)
RNAseq123_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RNAseq123/json (API)

# Install 'RNAseq123' in R:
install.packages('RNAseq123', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

workflowgeneexpressionworkflowimmunooncologyworkflow

1.30 score 0 exports 138 dependencies

Last updated from:2d60317e82. Checks:1 NOTE, 7 WARNING, 1 ERROR, 1 OK. Indexed: yes.
A new build is currently in progress.

TargetResultTimeFilesSyslog
bioc-checksNOTE308
linux-develWARNING416
source / vignettesERROR319
linux-releaseWARNING381
macos-releaseWARNING225
macos-oldrelWARNING221
windows-develWARNING831
windows-releaseWARNING786
windows-oldrelWARNING669
wasm-releaseOK232

Exports:

Dependencies:abindAnnotationDbiaskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocManagerBiocParallelBiocStyleBiocWorkflowToolsBiostringsbitbit64bitopsblobbookdownbslibcachemcaToolscigarilloclicliprcodetoolscpp11crayoncredentialscurlDBIDelayedArraydescDESeq2digestedgeRevaluatefarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgertggplot2git2rgitcredsGlimmaglueGO.dbgplotsgraphgtablegtoolshighrhtmltoolshtmlwidgetshttrhttr2iniIRangesisobandjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeMus.musculusopensslorg.Mm.eg.dbOrganismDbipakpkgconfigpngpurrrR.methodsS3R.ooR.utilsR6rappdirsRBGLRColorBrewerRcppRcppArmadilloRCurlrestfulrRhtslibrjsonrlangrmarkdownrprojrootRsamtoolsRSQLiterstudioapirtracklayerS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraystatmodstringistringrSummarizedExperimentsysTeachingDemostinytexTxDb.Mmusculus.UCSC.mm10.knownGeneusethisvctrsviridisLitewhiskerwithrxfunXMLXVectoryamlzip