Package: RImmPort 1.41.0

Introduction | Overview of ImmPort | Overview of RImmPort | Overview of CDISC SDTM Data Standard | RImmPort Data Model | RImmPort Study reference class | Notes on Study reference class and its components | RImmPort Functions | Foundational Functions | Load the RImmPort library | Set the MySQL database as ImmPort data source | Option 2: ImmPort SQLite database | Download zip files of ImmPort data, in Tab format. e.g.'SDY139' and 'SDY208' | Build a local SQLite ImmPort database instance. | Set the SQLite database as ImmPort data source | NOTE: In rest of this document, all RImmPort functions will use the SQLite ImmPort database as the ImmPort data source. | Get all data of a specific study | Get specific domain data of a specific study | Search and Integrate Functions | Get studies with specifc domain data | Get specifc domain data of a set of studies | Get the list of assay types | Get specific assay data of one or more studies | Utility functions | Serialize study data in RImmPort format | Load serialized study data into the R environment | Build a private SQLite ImmPort database instance. | Conclusion

Introduction | Initial Steps | Load the RImmPort library | Setup ImmPort data source that all RImmPort functions will use | Option 1: ImmPort MySQL database | Download zip files of ImmPort study data in MySQL format. e.g.'SDY139' and 'SDY208' | Load the data into a local MySQL database | Connect to the ImmPort MySQL database. | Set the data source as the ImmPort MySQL database. | Option 2: ImmPort SQLite database | Download zip files of ImmPort data, in Tab format. e.g.'SDY139' and 'SDY208' | Build a local SQLite ImmPort database instance. | Connect to the ImmPort SQLite database | Set the data source to the ImmPort SQLite DB | NOTE: In rest of the script, all RImmPort functions will use the SQLite ImmPort database as the data source. | Get all study ids | Get all data of a specific study | Get the list of Domain names. | Get list of studies with specifc domain data | Get specifc domain data of one or more studies | Get the list of assay types from ImmPort studies | Get specific assay data of one or more Immport studies | Serialize RImmPort-formatted study data as .rds files | Load the serialzed data (.rds) files of a specific domain of a study from the directory where the files are located