Package: RBioFormats 1.5.1
RBioFormats: R interface to Bio-Formats
An R package which interfaces the OME Bio-Formats Java library to allow reading of proprietary microscopy image data and metadata.
Authors:
RBioFormats_1.5.1.tar.gz
RBioFormats_1.5.1.zip(r-4.5)RBioFormats_1.5.1.zip(r-4.4)RBioFormats_1.5.1.zip(r-4.3)
RBioFormats_1.5.1.tgz(r-4.4-any)RBioFormats_1.5.1.tgz(r-4.3-any)
RBioFormats_1.5.1.tar.gz(r-4.5-noble)RBioFormats_1.5.1.tar.gz(r-4.4-noble)
RBioFormats_1.5.1.tgz(r-4.4-emscripten)RBioFormats_1.5.1.tgz(r-4.3-emscripten)
RBioFormats.pdf |RBioFormats.html✨
RBioFormats/json (API)
# Install 'RBioFormats' in R: |
install.packages('RBioFormats', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/aoles/rbioformats/issues
On BioConductor:RBioFormats-1.5.1(bioc 3.20)RBioFormats-1.4.0(bioc 3.19)
Last updated 2 months agofrom:08f56a4f88
Exports:AnnotatedImageAnnotatedImageListBioFormats.versioncheckJavaMemorycoreMetadatacoreMetadata<-dimorderFormatToolsglobalMetadataglobalMetadata<-ImageMetadataImageMetadataListmetadatametadata<-mockFileread.imageread.metadataread.omexmlseriesCountseriesMetadataseriesMetadata<-showwrite.image
Dependencies:abindbase64encBiocGenericsbitopsbslibcachemclidigestEBImageevaluatefastmapfftwtoolsfontawesomefsgluehighrhtmltoolshtmlwidgetsjpegjquerylibjsonliteknitrlatticelifecyclelocfitmemoisemimepngR6rappdirsRCurlrJavarlangrmarkdownS4Vectorssasstifftinytexxfunyaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
AnnotatedImage Class | .AnnotatedImage AnnotatedImage AnnotatedImage-class as.Image.AnnotatedImage print.AnnotatedImage show,AnnotatedImage-method |
AnnotatedImageList Class | .AnnotatedImageList AnnotatedImageList AnnotatedImageList-class |
Java Memory Settings | checkJavaMemory |
Metadata Accessors | coreMetadata coreMetadata<- coreMetadata<-,AnnotatedImage-method coreMetadata<-,ImageMetadata-method globalMetadata globalMetadata<- globalMetadata<-,AnnotatedImage-method globalMetadata<-,ImageMetadata-method metadata,AnnotatedImage-method metadata,AnnotatedImageList-method metadata,ANY-method metadata,ImageMetadata-method metadata,ImageMetadataList-method metadata<-,AnnotatedImage-method seriesMetadata seriesMetadata<- seriesMetadata<-,AnnotatedImage-method seriesMetadata<-,ImageMetadata-method |
Image Frames Order | dimorder |
Bio-Formats FormatTools Class | FormatTools |
ImageMetadata and ImageMetadataList Class | .ImageMetadata .ImageMetadataList ImageMetadata ImageMetadata-class ImageMetadataList ImageMetadataList-class print.ImageMetadata print.ImageMetadataList show,ImageMetadata-method show,ImageMetadataList-method |
Generate Test Images | mockFile |
R Interface to Bio-Formats | BioFormats.version RBioFormats |
Read Images | read.image |
Read Image Metadata | read.metadata |
Read OME-XML Metadata | read.omexml |
Number of Image Series | seriesCount seriesCount,AnnotatedImageList-method seriesCount,ANY-method seriesCount,array-method seriesCount,ImageMetadata-method seriesCount,ImageMetadataList-method seriesCount,matrix-method |
Write Images | write.image |