Package: QRscore 1.5.0

Fanding Zhou

QRscore: Quantile Rank Score

In genomics, differential analysis enables the discovery of groups of genes implicating important biological processes such as cell differentiation and aging. Non-parametric tests of differential gene expression usually detect shifts in centrality (such as mean or median), and therefore suffer from diminished power against alternative hypotheses characterized by shifts in spread (such as variance). This package provides a flexible family of non-parametric two-sample tests and K-sample tests, which is based on theoretical work around non-parametric tests, spacing statistics and local asymptotic normality (Erdmann-Pham et al., 2022+ [arXiv:2008.06664v2]; Erdmann-Pham, 2023+ [arXiv:2209.14235v2]).

Authors:Fanding Zhou [cre, aut], Alan Aw [aut], Dan Erdmann-Pham [aut], Jonathan Fischer [aut], Xurui Chen [ctb]

QRscore_1.5.0.tar.gz
QRscore_1.5.0.zip(r-4.7)QRscore_1.5.0.zip(r-4.6)QRscore_1.5.0.zip(r-4.5)
QRscore_1.5.0.tgz(r-4.6-any)QRscore_1.5.0.tgz(r-4.5-any)
QRscore_1.5.0.tar.gz(r-4.7-any)QRscore_1.5.0.tar.gz(r-4.6-any)
QRscore_1.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
QRscore/json (API)
NEWS

# Install 'QRscore' in R:
install.packages('QRscore', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/songlab-cal/qrscore/issues

Datasets:

On BioConductor:QRscore-1.5.0(bioc 3.24)QRscore-1.4.0(bioc 3.23)

statisticalmethoddifferentialexpressiongeneexpressionstructuralgenomicsgenetarget

3.48 score 3 scripts 244 downloads 10 exports 31 dependencies

Last updated from:8de552f1de. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE173
linux-devel-x86_64WARNING258
source / vignettesOK240
linux-release-x86_64WARNING282
macos-release-arm64WARNING153
macos-oldrel-arm64WARNING199
windows-develWARNING292
windows-releaseWARNING357
windows-oldrelWARNING290
wasm-releaseOK136

Exports:computeweight_dispcomputeweight_meangetCompositionPValueQRscore_FlexQRscore_ZINBQRscore_ZINB_nSamplesQRscoreGenetestQRscoreTestrank_xrzinbinom

Dependencies:arrangementsassertthatBHBiocParallelclicodetoolscpp11dplyrformatRfutile.loggerfutile.optionsgenericsgluegmphitandrunlambda.rlifecyclemagrittrMASSpillarpkgconfigpsclR6rcddrlangsnowtibbletidyselectutf8vctrswithr