Package: PeacoQC 1.23.0

Annelies Emmaneel

PeacoQC: Peak-based selection of high quality cytometry data

This is a package that includes pre-processing and quality control functions that can remove margin events, compensate and transform the data and that will use PeacoQCSignalStability for quality control. This last function will first detect peaks in each channel of the flowframe. It will remove anomalies based on the IsolationTree function and the MAD outlier detection method. This package can be used for both flow- and mass cytometry data.

Authors:Annelies Emmaneel [aut, cre]

PeacoQC_1.23.0.tar.gz
PeacoQC_1.23.0.zip(r-4.7)PeacoQC_1.23.0.zip(r-4.6)PeacoQC_1.23.0.zip(r-4.5)
PeacoQC_1.23.0.tgz(r-4.6-any)PeacoQC_1.23.0.tgz(r-4.5-any)
PeacoQC_1.23.0.tar.gz(r-4.7-any)PeacoQC_1.23.0.tar.gz(r-4.6-any)
PeacoQC_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PeacoQC/json (API)
NEWS

# Install 'PeacoQC' in R:
install.packages('PeacoQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saeyslab/peacoqc/issues

On BioConductor:PeacoQC-1.23.0(bioc 3.24)PeacoQC-1.22.0(bioc 3.23)

flowcytometryqualitycontrolpreprocessingpeakdetection

8.28 score 21 stars 4 packages 47 scripts 574 downloads 5 exports 72 dependencies

Last updated from:d65681026e. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE167
linux-devel-x86_64WARNING241
source / vignettesOK310
linux-release-x86_64WARNING282
macos-release-arm64WARNING300
macos-oldrel-arm64WARNING153
windows-develWARNING181
windows-releaseWARNING214
windows-oldrelWARNING182
wasm-releaseOK131

Exports:PeacoQCPeacoQCHeatmapPlotPeacoQCRemoveDoubletsRemoveMargins

Dependencies:abindBHBiobaseBiocGenericsbiocmakecirclizecliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncytolibdata.tableDelayedArraydigestdir.expirydoParalleldplyrfarverfilelockflowCoreflowWorkspaceforeachgenericsGetoptLongggplot2GlobalOptionsgluegraphgridExtragtableIRangesisobanditeratorslabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsncdfFlowpillarpkgconfigplyrpngR6RBGLRColorBrewerRcppRgraphvizRhdf5librjsonrlangRProtoBufLibS4ArraysS4VectorsS7scalesshapeSparseArraytibbletidyselectutf8vctrsviridisLitewithrXMLXVector

PeacoQC

Annelies Emmaneel

Rendered fromPeacoQC_Vignette.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2022-12-16
Started: 2020-01-14