Package: PeacoQC 1.15.0

Annelies Emmaneel

PeacoQC: Peak-based selection of high quality cytometry data

This is a package that includes pre-processing and quality control functions that can remove margin events, compensate and transform the data and that will use PeacoQCSignalStability for quality control. This last function will first detect peaks in each channel of the flowframe. It will remove anomalies based on the IsolationTree function and the MAD outlier detection method. This package can be used for both flow- and mass cytometry data.

Authors:Annelies Emmaneel [aut, cre]

PeacoQC_1.15.0.tar.gz
PeacoQC_1.15.0.zip(r-4.5)PeacoQC_1.15.0.zip(r-4.4)PeacoQC_1.15.0.zip(r-4.3)
PeacoQC_1.15.0.tgz(r-4.4-any)PeacoQC_1.15.0.tgz(r-4.3-any)
PeacoQC_1.15.0.tar.gz(r-4.5-noble)PeacoQC_1.15.0.tar.gz(r-4.4-noble)
PeacoQC_1.15.0.tgz(r-4.4-emscripten)PeacoQC_1.15.0.tgz(r-4.3-emscripten)
PeacoQC.pdf |PeacoQC.html✨
PeacoQC/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/saeyslab/peacoqc/issues

On BioConductor:PeacoQC-1.15.0(bioc 3.20)PeacoQC-1.14.0(bioc 3.19)

bioconductor-package

5 exports 1.75 score 74 dependencies 3 dependents

Last updated 2 months agofrom:c8c47c5b11

Exports:PeacoQCPeacoQCHeatmapPlotPeacoQCRemoveDoubletsRemoveMargins

Dependencies:abindBHBiobaseBiocGenericscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncytolibdata.tableDelayedArraydigestdoParalleldplyrfansifarverflowCoreflowWorkspaceforeachgenericsGetoptLongggplot2GlobalOptionsgluegraphgridExtragtableIRangesisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmunsellncdfFlownlmepillarpkgconfigplyrpngR6RBGLRColorBrewerRcppRgraphvizRhdf5librjsonrlangRProtoBufLibS4ArraysS4VectorsscalesshapeSparseArraytibbletidyselectutf8vctrsviridisLitewithrXMLXVectorzlibbioc