Package: PeacoQC 1.17.0

Annelies Emmaneel

PeacoQC: Peak-based selection of high quality cytometry data

This is a package that includes pre-processing and quality control functions that can remove margin events, compensate and transform the data and that will use PeacoQCSignalStability for quality control. This last function will first detect peaks in each channel of the flowframe. It will remove anomalies based on the IsolationTree function and the MAD outlier detection method. This package can be used for both flow- and mass cytometry data.

Authors:Annelies Emmaneel [aut, cre]

PeacoQC_1.17.0.tar.gz
PeacoQC_1.17.0.zip(r-4.5)PeacoQC_1.17.0.zip(r-4.4)PeacoQC_1.17.0.zip(r-4.3)
PeacoQC_1.17.0.tgz(r-4.5-any)PeacoQC_1.17.0.tgz(r-4.4-any)PeacoQC_1.17.0.tgz(r-4.3-any)
PeacoQC_1.17.0.tar.gz(r-4.5-noble)PeacoQC_1.17.0.tar.gz(r-4.4-noble)
PeacoQC_1.17.0.tgz(r-4.4-emscripten)PeacoQC_1.17.0.tgz(r-4.3-emscripten)
PeacoQC.pdf |PeacoQC.html✨
PeacoQC/json (API)
NEWS

# Install 'PeacoQC' in R:
install.packages('PeacoQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saeyslab/peacoqc/issues

On BioConductor:PeacoQC-1.17.0(bioc 3.21)PeacoQC-1.16.0(bioc 3.20)

flowcytometryqualitycontrolpreprocessingpeakdetection

7.38 score 16 stars 3 packages 28 scripts 475 downloads 5 exports 73 dependencies

Last updated 5 months agofrom:3449ab9153. Checks:1 OK, 8 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 29 2025
R-4.5-winNOTEMar 29 2025
R-4.5-macNOTEMar 29 2025
R-4.5-linuxNOTEMar 29 2025
R-4.4-winNOTEMar 29 2025
R-4.4-macNOTEMar 29 2025
R-4.4-linuxNOTEMar 29 2025
R-4.3-winNOTEMar 29 2025
R-4.3-macNOTEMar 29 2025

Exports:PeacoQCPeacoQCHeatmapPlotPeacoQCRemoveDoubletsRemoveMargins

Dependencies:abindBHBiobaseBiocGenericscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncytolibdata.tableDelayedArraydigestdoParalleldplyrfansifarverflowCoreflowWorkspaceforeachgenericsGetoptLongggplot2GlobalOptionsgluegraphgridExtragtableIRangesisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmunsellncdfFlownlmepillarpkgconfigplyrpngR6RBGLRColorBrewerRcppRgraphvizRhdf5librjsonrlangRProtoBufLibS4ArraysS4VectorsscalesshapeSparseArraytibbletidyselectutf8vctrsviridisLitewithrXMLXVector

PeacoQC

Annelies Emmaneel

Rendered fromPeacoQC_Vignette.Rmdusingknitr::rmarkdownon Mar 29 2025.

Last update: 2022-12-16
Started: 2020-01-14