Package: PathNetData 1.49.0
Ludwig Geistlinger
PathNetData: Experimental data for the PathNet package
This package contains the data employed in the vignette of the PathNet package. These data belong to the following publication: PathNet: A tool for pathway analysis using topological information. Dutta B, Wallqvist A, and Reifman J., Source Code for Biology and Medicine 2012 Sep 24;7(1):10.
Authors:
PathNetData_1.49.0.tar.gz
PathNetData_1.49.0.tar.gz(r-4.7-any)PathNetData_1.49.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PathNetData/json (API)
| # Install 'PathNetData' in R: |
| install.packages('PathNetData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- A - Adjacency matrix
- brain_regions - Direct evidence from brain regions dataset
- disease_progression - Direct evidence from disease progression dataset
- pathway - Pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database
On BioConductor:PathNetData-1.49.0(data/experiment 3.24)PathNetData-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatapathwayinteractiondatabasedatapkg
Last updated from:5b6d6f2cbb. Checks:1 ERROR, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 116 | ||
| linux-devel | OK | 168 | ||
| source / vignettes | OK | 148 | ||
| linux-release | OK | 175 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Experimental data for the PathNet package. | PathNetData-package PathNetData |
| Adjacency matrix | A |
| Direct evidence from brain regions dataset | brain_regions |
| Direct evidence from disease progression dataset | disease_progression |
| Pathways from the Kyoto Encyclopedia of Genes and Genomes (KEGG) database | pathway |