Introduction | Baseline subtraction | Peak detection | Batch operation | An alternative way to obtain proto-biomarkers
Package: PROcess 1.89.0
Xiaochun Li
PROcess: Ciphergen SELDI-TOF Processing
A package for processing protein mass spectrometry data.
Authors:
PROcess_1.89.0.tar.gz
PROcess_1.89.0.zip(r-4.7)PROcess_1.89.0.zip(r-4.6)PROcess_1.89.0.zip(r-4.5)
PROcess_1.89.0.tgz(r-4.6-any)PROcess_1.89.0.tgz(r-4.5-any)
PROcess_1.89.0.tar.gz(r-4.7-any)PROcess_1.89.0.tar.gz(r-4.6-any)
PROcess_1.89.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PROcess/json (API)
| # Install 'PROcess' in R: |
| install.packages('PROcess', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PROcess-1.89.0(bioc 3.24)PROcess-1.88.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologymassspectrometryproteomics
Last updated from:b8e4c89b87. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 135 | ||
| linux-devel-x86_64 | NOTE | 185 | ||
| source / vignettes | OK | 153 | ||
| linux-release-x86_64 | NOTE | 176 | ||
| macos-release-arm64 | NOTE | 119 | ||
| macos-oldrel-arm64 | NOTE | 85 | ||
| windows-devel | NOTE | 83 | ||
| windows-release | NOTE | 78 | ||
| windows-oldrel | NOTE | 83 | ||
| wasm-release | OK | 109 |
Exports:alignavesdaveSpecbinningbslnoffgelmapgetMzsgetPeaksgetPeaks2intgis.multipleisPeaklnnnoisepeakspk2bmkrqualityread.filesrenormrmBaselinesigmaspecZoom
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Align peaks for a specified precision. | align |
| Compute the Average Standard Deviation for a Set of Spectra and a Given Cutoff Point | avesd |
| Compute mean spectrum of a set of spectra | aveSpec |
| Binning the Mass Spectrometry Data | binning |
| Baseline Substraction | bslnoff |
| Plot the image of a set of spectra | gelmap |
| Extract M/Z values from the biomarker dataframe. | getMzs |
| Peak Detection | getPeaks |
| Quantify peaks for individual spectra. | getPeaks2 |
| Integration | intg |
| Find multiple-charged polypeptides. | is.multiple |
| Locate Peaks in a Spectrum | isPeak |
| Estimate Signal and Variation of a Spectrum | lnn |
| Peak Detection | noise peaks sigma |
| Find Biomarkers. | pk2bmkr |
| Quality Check on a Set of Spectra | quality |
| Read a Spectrum from a Comma Deliminated File | read.files |
| Renormalize Spectra | renorm |
| Batch Baseline Subtraction. | rmBaseline |
| Plotting a Spectrum with Peaks | specZoom |