Package: PROcess 1.83.0
Xiaochun Li
PROcess: Ciphergen SELDI-TOF Processing
A package for processing protein mass spectrometry data.
Authors:
PROcess_1.83.0.tar.gz
PROcess_1.83.0.zip(r-4.5)PROcess_1.83.0.zip(r-4.4)PROcess_1.83.0.zip(r-4.3)
PROcess_1.83.0.tgz(r-4.4-any)PROcess_1.83.0.tgz(r-4.3-any)
PROcess_1.83.0.tar.gz(r-4.5-noble)PROcess_1.83.0.tar.gz(r-4.4-noble)
PROcess_1.83.0.tgz(r-4.4-emscripten)PROcess_1.83.0.tgz(r-4.3-emscripten)
PROcess.pdf |PROcess.html✨
PROcess/json (API)
| # Install 'PROcess' in R: |
| install.packages('PROcess', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:PROcess-1.83.0(bioc 3.21)PROcess-1.82.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologymassspectrometryproteomics
Last updated 2 months agofrom:abf0d44615. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 30 2024 |
| R-4.5-win | NOTE | Nov 30 2024 |
| R-4.5-linux | NOTE | Nov 30 2024 |
| R-4.4-win | NOTE | Nov 30 2024 |
| R-4.4-mac | NOTE | Nov 30 2024 |
| R-4.3-win | NOTE | Nov 30 2024 |
| R-4.3-mac | NOTE | Nov 30 2024 |
Exports:alignavesdaveSpecbinningbslnoffgelmapgetMzsgetPeaksgetPeaks2intgis.multipleisPeaklnnnoisepeakspk2bmkrqualityread.filesrenormrmBaselinesigmaspecZoom
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Align peaks for a specified precision. | align |
| Compute the Average Standard Deviation for a Set of Spectra and a Given Cutoff Point | avesd |
| Compute mean spectrum of a set of spectra | aveSpec |
| Binning the Mass Spectrometry Data | binning |
| Baseline Substraction | bslnoff |
| Plot the image of a set of spectra | gelmap |
| Extract M/Z values from the biomarker dataframe. | getMzs |
| Peak Detection | getPeaks |
| Quantify peaks for individual spectra. | getPeaks2 |
| Integration | intg |
| Find multiple-charged polypeptides. | is.multiple |
| Locate Peaks in a Spectrum | isPeak |
| Estimate Signal and Variation of a Spectrum | lnn |
| Peak Detection | noise peaks sigma |
| Find Biomarkers. | pk2bmkr |
| Quality Check on a Set of Spectra | quality |
| Read a Spectrum from a Comma Deliminated File | read.files |
| Renormalize Spectra | renorm |
| Batch Baseline Subtraction. | rmBaseline |
| Plotting a Spectrum with Peaks | specZoom |