Package: PREDAsampledata 0.53.0
Francesco Ferrari
PREDAsampledata: expression and copy number data on clear cell renal carcinoma samples
Sample data for PREDA package. (annotations objects synchronized with GeneAnnot custom CDFs version 2.2.0)
Authors:
PREDAsampledata_0.53.0.tar.gz
PREDAsampledata_0.53.0.tar.gz(r-4.7-any)PREDAsampledata_0.53.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PREDAsampledata/json (API)
| # Install 'PREDAsampledata' in R: |
| install.packages('PREDAsampledata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- AffybatchRCC - AffyBatch object for clear cell renal carcinoma (RCC) sample dataset
- ExpressionSetRCC - ExpressionSet object for clear cell renal carcinoma (RCC) sample dataset
- GEanalysisResults - RCC gene expression sample dataset - PREDA analysis results
- SODEGIRCNanalysisResults - SODEGIR analysis results on Copy Number data
- SODEGIRCNDataForPREDA - Copy Number input data for PREDA analysis
- SODEGIRGEanalysisResults - SODEGIR analysis results on Gene Expression data
- SODEGIRGEDataForPREDA - Gene Expression input data for PREDA analysis
On BioConductor:PREDAsampledata-0.53.0(data/experiment 3.24)PREDAsampledata-0.52.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatatissuecancerdatakidneycancerdatamicroarraydatatissuemicroarraydataarrayexpressdatapkg
Last updated from:11f1d9be9b. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 143 | ||
| linux-devel | NOTE | 248 | ||
| source / vignettes | OK | 499 | ||
| linux-release | NOTE | 244 |
Exports:
Dependencies:affyaffyioannotateAnnotationDbiaskpassBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgenericsgluehttrIRangesjsonliteKEGGRESTlatticelifecyclelokernMASSMatrixmemoisemimemulttestopensslpkgconfigpngPREDApreprocessCoreR6rlangRSQLiteS4VectorsSeqinfosfsmiscsurvivalsysvctrsXMLxtableXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| AffyBatch object for clear cell renal carcinoma (RCC) sample dataset | AffybatchRCC |
| ExpressionSet object for clear cell renal carcinoma (RCC) sample dataset | ExpressionSetRCC |
| RCC gene expression sample dataset - PREDA analysis results | GEanalysisResults |
| SODEGIR analysis results on Copy Number data | SODEGIRCNanalysisResults |
| Copy Number input data for PREDA analysis | SODEGIRCNDataForPREDA |
| SODEGIR analysis results on Gene Expression data | SODEGIRGEanalysisResults |
| Gene Expression input data for PREDA analysis | SODEGIRGEDataForPREDA |