Package: PIPETS 1.3.0

Quinlan Furumo

PIPETS: Poisson Identification of PEaks from Term-Seq data

PIPETS provides statistically robust analysis for 3'-seq/term-seq data. It utilizes a sliding window approach to apply a Poisson Distribution test to identify genomic positions with termination read coverage that is significantly higher than the surrounding signal. PIPETS then condenses proximal signal and produces strand specific results that contain all significant termination peaks.

Authors:Quinlan Furumo [aut, cre]

PIPETS_1.3.0.tar.gz
PIPETS_1.3.0.zip(r-4.5)PIPETS_1.3.0.zip(r-4.4)
PIPETS_1.3.0.tgz(r-4.5-any)PIPETS_1.3.0.tgz(r-4.4-any)
PIPETS_1.3.0.tar.gz(r-4.5-noble)PIPETS_1.3.0.tar.gz(r-4.4-noble)
PIPETS_1.3.0.tgz(r-4.4-emscripten)
PIPETS.pdf |PIPETS.html✨
PIPETS/json (API)
NEWS

# Install 'PIPETS' in R:
install.packages('PIPETS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/qfurumo/pipets/issues

On BioConductor:PIPETS-1.3.0(bioc 3.21)PIPETS-1.2.0(bioc 3.20)

sequencingtranscriptiongeneregulationpeakdetectiongeneticstranscriptomicscoverage

3.85 score 2 scripts 159 downloads 1 exports 31 dependencies

Last updated 4 months agofrom:611f6762e1. Checks:6 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 15 2025
R-4.5-winOKFeb 15 2025
R-4.5-macOKFeb 15 2025
R-4.5-linuxOKFeb 15 2025
R-4.4-winOKFeb 15 2025
R-4.4-macOKFeb 15 2025

Exports:PIPETS_FullRun

Dependencies:askpassBiocGenericsclicurldplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangS4VectorssystibbletidyselectUCSC.utilsutf8vctrswithrXVector

Analyzing 3'-seq/Term-seq Data with PIPETS

Author: Quinlan Furumo

Rendered fromPIPETS.Rmdusingknitr::rmarkdownon Feb 15 2025.

Last update: 2024-09-30
Started: 2023-09-25