Package: PIPETS 1.3.0
Quinlan Furumo
PIPETS: Poisson Identification of PEaks from Term-Seq data
PIPETS provides statistically robust analysis for 3'-seq/term-seq data. It utilizes a sliding window approach to apply a Poisson Distribution test to identify genomic positions with termination read coverage that is significantly higher than the surrounding signal. PIPETS then condenses proximal signal and produces strand specific results that contain all significant termination peaks.
Authors:
PIPETS_1.3.0.tar.gz
PIPETS_1.3.0.zip(r-4.5)PIPETS_1.3.0.zip(r-4.4)PIPETS_1.1.5.zip(r-4.3)
PIPETS_1.3.0.tgz(r-4.4-any)PIPETS_1.1.5.tgz(r-4.3-any)
PIPETS_1.3.0.tar.gz(r-4.5-noble)PIPETS_1.3.0.tar.gz(r-4.4-noble)
PIPETS_1.3.0.tgz(r-4.4-emscripten)PIPETS_1.1.5.tgz(r-4.3-emscripten)
PIPETS.pdf |PIPETS.html✨
PIPETS/json (API)
NEWS
| # Install 'PIPETS' in R: |
| install.packages('PIPETS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/qfurumo/pipets/issues
On BioConductor:PIPETS-1.3.0(bioc 3.21)PIPETS-1.2.0(bioc 3.20)
sequencingtranscriptiongeneregulationpeakdetectiongeneticstranscriptomicscoverage
Last updated 21 days agofrom:611f6762e1. Checks:OK: 3 WARNING: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-win | WARNING | Nov 17 2024 |
| R-4.5-linux | WARNING | Nov 17 2024 |
| R-4.4-win | WARNING | Nov 17 2024 |
| R-4.4-mac | WARNING | Nov 17 2024 |
| R-4.3-win | OK | Oct 01 2024 |
| R-4.3-mac | OK | Oct 01 2024 |
Exports:PIPETS_FullRun
Dependencies:askpassBiocGenericsclicurldplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigR6rlangS4VectorssystibbletidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc
