Package: PIPETS 1.7.0

Quinlan Furumo

PIPETS: Poisson Identification of PEaks from Term-Seq data

PIPETS provides statistically robust analysis for 3'-seq/term-seq data. It utilizes a sliding window approach to apply a Poisson Distribution test to identify genomic positions with termination read coverage that is significantly higher than the surrounding signal. PIPETS then condenses proximal signal and produces strand specific results that contain all significant termination peaks.

Authors:Quinlan Furumo [aut, cre]

PIPETS_1.7.0.tar.gz
PIPETS_1.7.0.zip(r-4.7)PIPETS_1.7.0.zip(r-4.6)PIPETS_1.7.0.zip(r-4.5)
PIPETS_1.7.0.tgz(r-4.6-any)PIPETS_1.7.0.tgz(r-4.5-any)
PIPETS_1.7.0.tar.gz(r-4.7-any)PIPETS_1.7.0.tar.gz(r-4.6-any)
PIPETS_1.7.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PIPETS/json (API)
NEWS

# Install 'PIPETS' in R:
install.packages('PIPETS', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/qfurumo/pipets/issues

On BioConductor:PIPETS-1.9.0(bioc 3.24)PIPETS-1.8.0(bioc 3.23)

sequencingtranscriptiongeneregulationpeakdetectiongeneticstranscriptomicscoverage

3.00 score 2 scripts 268 downloads 1 exports 20 dependencies

Last updated from:6146b1fb14. Checks:1 NOTE, 9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE157
linux-devel-x86_64OK202
source / vignettesOK186
linux-release-x86_64OK174
macos-release-arm64OK132
macos-oldrel-arm64OK136
windows-develOK135
windows-releaseOK109
windows-oldrelOK110
wasm-releaseOK108

Exports:PIPETS_FullRun

Dependencies:BiocGenericsclidplyrgenericsGenomicRangesglueIRangeslifecyclemagrittrpillarpkgconfigR6rlangS4VectorsSeqinfotibbletidyselectutf8vctrswithr

Analyzing 3'-seq/Term-seq Data with PIPETS

Author: Quinlan Furumo

Rendered fromPIPETS.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2024-09-30
Started: 2023-09-25