NEWS
PIPETS 1.1.3 (2024-07-12)
- Changed read quality score parameter from a set value to a minimum, so anything equal to or greater than the input value will be considered
PIPETS 1.1.2 (2024-07-11)
- Changed PIPETS to use read quality score as a cutoff instead of read length. Functions as better trimming process
- Input bed files and GRanges objects now both correctly use read quality score
- Updated Vignette file wording to properly match recent changes
PIPETS 1.1.1 (2024-06-06)
- Resolved Git inconsistencies, made minor fixes
PIPETS 1.1.0 (2024-05-14)
- Added Benjamini-Hochberg multiple testing correction to help reduce incidence of Type I error
PIPETS 1.0.0 (2024-02-20)
- Accepted to Bioconductor
- Accepts both bedFile and GRanges as input formats
- Outputs strand-split bed files and strand-split output files containing identified significant 3'-end peaks for both input formats