Session info
Package: PCHiCdata 1.41.0
Mikhail Spivakov
PCHiCdata: Promoter Capture Hi-C data
Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.
Authors:
PCHiCdata_1.41.0.tar.gz
PCHiCdata_1.41.0.tar.gz(r-4.7-any)PCHiCdata_1.41.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
PCHiCdata/json (API)
| # Install 'PCHiCdata' in R: |
| install.packages('PCHiCdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
On BioConductor:PCHiCdata-1.41.0(data/experiment 3.24)PCHiCdata-1.40.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatasequencingdatahomo_sapiens_datamus_musculus_datastemcelldatapkg
Last updated from:4674ddfec8. Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 173 | ||
| linux-devel | WARNING | 359 | ||
| source / vignettes | OK | 590 | ||
| linux-release | WARNING | 279 |
Exports:
Dependencies:backportsbase64encbslibcachemcheckmateChicagocliclustercolorspacecpp11data.tableDelaportedigestevaluatefarverfastmapfontawesomeforeignFormulafsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglifecyclemagrittrMASSmatrixStatsmemoisemimennetR6rappdirsRColorBrewerrlangrmarkdownrpartrstudioapiS7sassscalesstringistringrtinytexvctrsviridisLitewithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Promoter Capture Hi-C data | PCHiCdata-package PCHiCdata |
| Promoter Capture data for chromosomes 20 and 21 in GM12878 | sGM12878 |
| Promoter Capture data for chromosomes 18 and 19 in smESC | smESC |