Package: PAST 1.29.0

Thrash Adam

PAST: Pathway Association Study Tool (PAST)

PAST takes GWAS output and assigns SNPs to genes, uses those genes to find pathways associated with the genes, and plots pathways based on significance. Implements methods for reading GWAS input data, finding genes associated with SNPs, calculating enrichment score and significance of pathways, and plotting pathways.

Authors:Thrash Adam [cre, aut], DeOrnellis Mason [aut]

PAST_1.29.0.tar.gz
PAST_1.29.0.zip(r-4.7)PAST_1.29.0.zip(r-4.6)PAST_1.29.0.zip(r-4.5)
PAST_1.29.0.tgz(r-4.6-any)PAST_1.29.0.tgz(r-4.5-any)
PAST_1.29.0.tar.gz(r-4.7-any)PAST_1.29.0.tar.gz(r-4.6-any)
PAST_1.29.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PAST/json (API)
NEWS

# Install 'PAST' in R:
install.packages('PAST', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/igbb/past/issues

On BioConductor:PAST-1.29.0(bioc 3.24)PAST-1.28.0(bioc 3.23)

pathwaysgenesetenrichment

5.70 score 5 stars 6 scripts 376 downloads 2.3k mentions 5 exports 80 dependencies

Last updated from:b3a609543d. Checks:8 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING185
linux-devel-x86_64WARNING547
source / vignettesOK332
linux-release-x86_64WARNING482
macos-release-arm64WARNING317
macos-oldrel-arm64WARNING293
windows-develWARNING416
windows-releaseWARNING461
windows-oldrelWARNING427
wasm-releaseOK160

Exports:assign_SNPs_to_genesfind_pathway_significanceload_GWAS_dataload_LDplot_pathways

Dependencies:abindaskpassBHBiobaseBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarilloclicodetoolscpp11crayoncurlDelayedArraydoParalleldplyrfarverforeachformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangesggplot2gluegtablehttrIRangesisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigplyrqvalueR6RColorBrewerRcppRCurlreshape2restfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorsS7scalesSeqinfosnowSparseArraystringistringrSummarizedExperimentsystibbletidyselectutf8vctrsviridisLitewithrXMLXVectoryaml

PAST

Adam Thrash

Rendered frompast.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-03-11
Started: 2019-03-01