Introduction | Dependencies | Workflow | Creating Layouts | Automated Layouts | Subdivisions | Masking | Custom Layouts | Simple example | Randomization Variables | Running Omixer | Regenerating Layouts | Sample Sheets | Extended example | Creating Toy Data | Setting up Variables | Simple Randomization | Regenerating layouts | References | Session Info
Package: Omixer 1.23.0
Lucy Sinke
Omixer: Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies
Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.
Authors:
Omixer_1.23.0.tar.gz
Omixer_1.23.0.zip(r-4.7)Omixer_1.23.0.zip(r-4.6)Omixer_1.23.0.zip(r-4.5)
Omixer_1.23.0.tgz(r-4.6-any)Omixer_1.23.0.tgz(r-4.5-any)
Omixer_1.23.0.tar.gz(r-4.7-any)Omixer_1.23.0.tar.gz(r-4.6-any)
Omixer_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Omixer/json (API)
| # Install 'Omixer' in R: |
| install.packages('Omixer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Omixer-1.23.0(bioc 3.24)Omixer-1.22.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
datarepresentationexperimentaldesignqualitycontrolsoftwarevisualization
Last updated from:d1f35a987a. Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | WARNING | 170 | ||
| linux-devel-x86_64 | NOTE | 216 | ||
| source / vignettes | OK | 258 | ||
| linux-release-x86_64 | NOTE | 214 | ||
| macos-release-arm64 | NOTE | 121 | ||
| macos-oldrel-arm64 | NOTE | 95 | ||
| windows-devel | NOTE | 92 | ||
| windows-release | NOTE | 99 | ||
| windows-oldrel | NOTE | 93 | ||
| wasm-release | OK | 126 |
Exports:omixerCorromixerRandomixerSheetomixerSpecific
Dependencies:bitbit64clicliprcpp11crayondplyrfarverforcatsgenericsggplot2gluegridExtragtablehmsisobandlabelinglifecyclemagrittrpillarpkgconfigprettyunitsprogressR6RColorBrewerreadrrlangS7scalesstringistringrtibbletidyselecttzdbutf8vctrsviridisLitevroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Multivariate Randomization | Omixer |
| Correlation Tests | omixerCorr |
| Multivariate Randomization | omixerRand |
| Sample Sheet Generation | omixerSheet |
| Sample List Regeneration | omixerSpecific |
