Package: Omixer 1.17.0

Lucy Sinke

Omixer: Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Authors:Lucy Sinke [cre, aut]

Omixer_1.17.0.tar.gz
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Omixer_1.17.0.tgz(r-4.4-any)Omixer_1.17.0.tgz(r-4.3-any)
Omixer_1.17.0.tar.gz(r-4.5-noble)Omixer_1.17.0.tar.gz(r-4.4-noble)
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Omixer.pdf |Omixer.html✨
Omixer/json (API)
NEWS

# Install 'Omixer' in R:
install.packages('Omixer', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:Omixer-1.15.0(bioc 3.20)Omixer-1.14.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

datarepresentationexperimentaldesignqualitycontrolsoftwarevisualization

4.00 score 2 scripts 142 downloads 4 exports 46 dependencies

Last updated 23 days agofrom:c6bc8542f5. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winNOTEOct 30 2024
R-4.5-linuxNOTEOct 30 2024
R-4.4-winNOTEOct 30 2024
R-4.4-macNOTEOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:omixerCorromixerRandomixerSheetomixerSpecific

Dependencies:bitbit64clicliprcolorspacecpp11crayondplyrfansifarverforcatsgenericsggplot2gluegridExtragtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogressR6RColorBrewerreadrrlangscalesstringistringrtibbletidyselecttzdbutf8vctrsviridisLitevroomwithr

Omixer: multivariate and reproducible randomization to proactively counter batch effects in omics studies

Lucy Sinke, Davy Cats, Bas Heijmans

Rendered fromomixer-vignette.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2021-08-16
Started: 2020-06-02