Package: OSTA 1.3.1

Lukas M. Weber

OSTA: Orchestrating Spatial Transcriptomics Analysis with Bioconductor

This package contains source files for the "Orchestrating Spatial Transcriptomics Analysis with Bioconductor" online book. This book provides interactive examples and discussion on key principles of computational analysis workflows for spatial transcriptomics data using Bioconductor in R. The book contains chapters describing individual analysis steps as well as extended workflows, each with examples including R code and datasets.

Authors:Helena L. Crowell [aut], Mark D. Robinson [aut], Stephanie C. Hicks [aut], Lukas M. Weber [aut, cre]

OSTA_1.3.1.tar.gz
OSTA_1.3.1.tar.gz(r-4.7-any)OSTA_1.3.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
OSTA/json (API)

# Install 'OSTA' in R:
install.packages('OSTA', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmweber/osta/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT

On BioConductor:OSTA-1.3.0(books 3.24)OSTA-1.2.2(books 3.23)

spatialsinglecellgeneexpressiontranscriptomicsanalysis-workflowsbioconductorspatial-transcriptomicsspatially-resolved-transcriptomicsdatapkgopenjdk

7.19 score 116 stars 0 exports 454 dependencies

Last updated from:ca9ebaa54a. Checks:2 ERROR, 2 WARNING. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR350
linux-develWARNING467
source / vignettesERROR3902
linux-releaseWARNING379

Exports:

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