Package: NGScopyData 1.33.0
Xiaobei Zhao
NGScopyData: Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package
Subset of BAM files of human lung tumor and pooled normal samples by targeted panel sequencing. [Zhao et al 2014. Targeted Sequencing in Non-Small Cell Lung Cancer (NSCLC) Using the University of North Carolina (UNC) Sequencing Assay Captures Most Previously Described Genetic Aberrations in NSCLC. In preparation.] Each sample is a 10 percent random subsample drawn from the original sequencing data. The pooled normal sample has been rescaled accroding to the total number of normal samples in the "pool". Here provided is the subsampled data on chr6 (hg19).
Authors:
NGScopyData_1.33.0.tar.gz
NGScopyData_1.33.0.tar.gz(r-4.7-any)NGScopyData_1.33.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
NGScopyData/json (API)
| # Install 'NGScopyData' in R: |
| install.packages('NGScopyData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:NGScopyData-1.33.0(data/experiment 3.24)NGScopyData-1.32.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatacancerdatalungcancerdatasequencingdatadatapkg
Last updated from:d34df7e4e5. Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 116 | ||
| linux-devel | WARNING | 185 | ||
| source / vignettes | OK | 123 | ||
| linux-release | WARNING | 135 |
Exports:tps_27.chr6tps_90.chr6tps_N8.chr6
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Subset of BAM files of human tumor and pooled normal sequencing data (Zhao et al. 2014) for the NGScopy package | NGScopyData-package NGScopyData |
| A subset of tumor sample (ID: 27) by targeted panel sequencing | tps_27.chr6 |
| A subset of tumor sample (ID: 90) by targeted panel sequencing | tps_90.chr6 |
| A subset of pooled normal sample (ID: N8) by targeted panel sequencing | tps_N8.chr6 |