Package: MungeSumstats 1.13.1
MungeSumstats: Standardise summary statistics from GWAS
The *MungeSumstats* package is designed to facilitate the standardisation of GWAS summary statistics. It reformats inputted summary statisitics to include SNP, CHR, BP and can look up these values if any are missing. It also pefrorms dozens of QC and filtering steps to ensure high data quality and minimise inter-study differences.
Authors:
MungeSumstats_1.13.1.tar.gz
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MungeSumstats_1.13.1.tgz(r-4.4-any)MungeSumstats_1.13.1.tgz(r-4.3-any)
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MungeSumstats.pdf |MungeSumstats.html✨
MungeSumstats/json (API)
NEWS
# Install 'MungeSumstats' in R: |
install.packages('MungeSumstats', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/neurogenomics/mungesumstats/issues
- sumstatsColHeaders - Summary Statistics Column Headers
On BioConductor:MungeSumstats-1.13.1(bioc 3.20)MungeSumstats-1.12.0(bioc 3.19)
Last updated 2 months agofrom:08bb31d20a
Exports:compute_nsizedownload_vcffind_sumstatsformat_sumstatsformatted_exampleget_genome_buildsimport_sumstatsindex_tabularinfer_effect_columnliftoverlist_sumstatsload_snp_loc_dataparse_logsread_headerread_sumstatsread_vcfstandardise_headervcf2dfwrite_sumstats
Dependencies:abindAnnotationDbiaskpassassertthatBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemclicodetoolscpp11crayoncurldata.tableDBIDelayedArraydigestdplyrfansifastmapformatRfsfutile.loggerfutile.optionsgarglegenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgluegoogleAuthRhttrIRangesjsonliteKEGGRESTlambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigplogrpngR.methodsS3R.ooR.utilsR6rappdirsRCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyselectUCSC.utilsutf8VariantAnnotationvctrswithrXMLXVectoryamlzlibbioc