Package: MuData 1.11.1

Ilia Kats

MuData: Serialization for MultiAssayExperiment Objects

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Authors:Danila Bredikhin [aut], Ilia Kats [aut, cre]

MuData_1.11.1.tar.gz
MuData_1.11.1.zip(r-4.5)MuData_1.11.1.zip(r-4.4)MuData_1.11.1.zip(r-4.3)
MuData_1.11.1.tgz(r-4.5-any)MuData_1.11.1.tgz(r-4.4-any)MuData_1.11.1.tgz(r-4.3-any)
MuData_1.11.1.tar.gz(r-4.5-noble)MuData_1.11.1.tar.gz(r-4.4-noble)
MuData_1.11.1.tgz(r-4.4-emscripten)MuData_1.11.1.tgz(r-4.3-emscripten)
MuData.pdf |MuData.html✨
MuData/json (API)
NEWS

# Install 'MuData' in R:
install.packages('MuData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ilia-kats/mudata/issues

On BioConductor:MuData-1.11.1(bioc 3.21)MuData-1.10.0(bioc 3.20)

dataimportanndatabioconductormudatamulti-omicsmultimodal-omicsscrna-seq

5.89 score 5 stars 26 scripts 244 downloads 4 exports 53 dependencies

Last updated 1 months agofrom:aa2290dd00. Checks:1 OK, 6 NOTE, 2 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 27 2025
R-4.5-winNOTEMar 27 2025
R-4.5-macNOTEMar 27 2025
R-4.5-linuxNOTEMar 27 2025
R-4.4-winNOTEMar 27 2025
R-4.4-macNOTEMar 27 2025
R-4.4-linuxNOTEMar 27 2025
R-4.3-winERRORMar 27 2025
R-4.3-macERRORMar 27 2025

Exports:readH5ADreadH5MUwriteH5ADwriteH5MU

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocGenericsclicpp11crayoncurlDelayedArraydplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeMultiAssayExperimentopensslpillarpkgconfigpurrrR6rhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVector

CITE-seq data with CiteFuse and MuData

Danila Bredikhin, Ilia Kats

Rendered fromBlood-CITE-seq.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2022-01-10
Started: 2021-12-10

CITE-seq data with MultiAssayExperiment and MuData

Danila Bredikhin, Ilia Kats

Rendered fromCord-Blood-CITE-seq.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2022-01-10
Started: 2021-12-10

Getting started with MuData for MultiAssayExperiment

Danila Bredikhin, Ilia Kats

Rendered fromGetting-Started.Rmdusingknitr::rmarkdownon Mar 27 2025.

Last update: 2021-12-21
Started: 2021-09-23