Package: MuData 1.17.0

Ilia Kats

MuData: Serialization for MultiAssayExperiment Objects

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Authors:Danila Bredikhin [aut], Ilia Kats [aut, cre]

MuData_1.17.0.tar.gz
MuData_1.17.0.zip(r-4.7)MuData_1.17.0.zip(r-4.6)MuData_1.17.0.zip(r-4.5)
MuData_1.17.0.tgz(r-4.6-any)MuData_1.17.0.tgz(r-4.5-any)
MuData_1.17.0.tar.gz(r-4.7-any)MuData_1.17.0.tar.gz(r-4.6-any)
MuData_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MuData/json (API)

# Install 'MuData' in R:
install.packages('MuData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ilia-kats/mudata/issues

On BioConductor:MuData-1.17.0(bioc 3.24)MuData-1.16.0(bioc 3.23)

dataimportanndatabioconductormudatamulti-omicsmultimodal-omicsscrna-seq

6.67 score 10 stars 39 scripts 4 exports 45 dependencies

Last updated from:0aa5439897. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE239
linux-devel-x86_64NOTE413
source / vignettesOK434
linux-release-x86_64NOTE390
macos-release-arm64NOTE173
macos-oldrel-arm64NOTE177
windows-develNOTE593
windows-releaseNOTE619
windows-oldrelNOTE581
wasm-releaseOK231

Exports:readH5ADreadH5MUwriteH5ADwriteH5MU

Dependencies:abindBiobaseBiocBaseUtilsBiocGenericsbiocmakeclicpp11DelayedArraydir.expirydplyrfilelockgenericsGenomicRangesglueIRangeslatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsMultiAssayExperimentpillarpkgconfigpurrrR6rhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimenttibbletidyrtidyselectutf8vctrswithrXVector

CITE-seq data with CiteFuse and MuData
Introduction | Installation | Loading libraries | Loading data | Processing count matrices | Making a MultiAssayExperiment object | Writing to H5MU | References | Session Info
Rendered fromBlood-CITE-seq.Rmdusingknitr::rmarkdown

Last update: 2022-01-10
Started: 2021-12-10

CITE-seq data with MultiAssayExperiment and MuData
Introduction | Installation | Loading libraries | Loading data | Processing ADT data | Writing H5MU files | References | Session Info
Rendered fromCord-Blood-CITE-seq.Rmdusingknitr::rmarkdown

Last update: 2022-01-10
Started: 2021-12-10

Getting started with MuData for MultiAssayExperiment
Introduction | Installation | Loading libraries | Writing H5MU files | Reading H5MU files | Creating MAE objects from H5MU files | Backed objects | References | Session Info
Rendered fromGetting-Started.Rmdusingknitr::rmarkdown

Last update: 2021-12-21
Started: 2021-09-23