Package: MuData 1.11.0

Danila Bredikhin

MuData: Serialization for MultiAssayExperiment Objects

Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.

Authors:Danila Bredikhin [aut, cre], Ilia Kats [aut]

MuData_1.11.0.tar.gz
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MuData_1.11.0.tgz(r-4.4-any)MuData_1.11.0.tgz(r-4.3-any)
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MuData.pdf |MuData.html✨
MuData/json (API)
NEWS

# Install 'MuData' in R:
install.packages('MuData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ilia-kats/mudata/issues

On BioConductor:MuData-1.11.0(bioc 3.21)MuData-1.10.0(bioc 3.20)

dataimportanndatabioconductormudatamulti-omicsmultimodal-omicsscrna-seq

5.89 score 5 stars 26 scripts 161 downloads 4 exports 54 dependencies

Last updated 2 months agofrom:372bd2d0df. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 06 2024
R-4.5-winNOTEDec 06 2024
R-4.5-linuxNOTEDec 06 2024
R-4.4-winNOTEDec 06 2024
R-4.4-macNOTEDec 06 2024
R-4.3-winNOTEDec 06 2024
R-4.3-macNOTEDec 06 2024

Exports:readH5ADreadH5MUwriteH5ADwriteH5MU

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocGenericsclicpp11crayoncurlDelayedArraydplyrfansigenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgluehttrIRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeMultiAssayExperimentopensslpillarpkgconfigpurrrR6rhdf5rhdf5filtersRhdf5librlangS4ArraysS4VectorsSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectorzlibbioc

CITE-seq data with CiteFuse and MuData

Danila Bredikhin, Ilia Kats

Rendered fromBlood-CITE-seq.Rmdusingknitr::rmarkdownon Dec 06 2024.

Last update: 2022-01-10
Started: 2021-12-10

CITE-seq data with MultiAssayExperiment and MuData

Danila Bredikhin, Ilia Kats

Rendered fromCord-Blood-CITE-seq.Rmdusingknitr::rmarkdownon Dec 06 2024.

Last update: 2022-01-10
Started: 2021-12-10

Getting started with MuData for MultiAssayExperiment

Danila Bredikhin, Ilia Kats

Rendered fromGetting-Started.Rmdusingknitr::rmarkdownon Dec 06 2024.

Last update: 2021-12-21
Started: 2021-09-23