Package: MouseThymusAgeing 1.21.0

Mike Morgan

MouseThymusAgeing: Single-cell Transcriptomics Data of the Ageing Mouse Thymus

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

Authors:Mike Morgan [aut, cre], Jeanette Baran-Gale [aut]

MouseThymusAgeing_1.21.0.tar.gz
MouseThymusAgeing_1.21.0.tar.gz(r-4.7-any)MouseThymusAgeing_1.21.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MouseThymusAgeing/json (API)

# Install 'MouseThymusAgeing' in R:

install.packages('MouseThymusAgeing', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/marionilab/mousethymusageing/issues

On BioConductor:MouseThymusAgeing-1.21.0(data/experiment 3.24)MouseThymusAgeing-1.20.0(data/experiment 3.23)

experimenthub singlecelldata expressiondata experimentdata datapkg

4.00 score 9 scripts 4 exports 68 dependencies

Last updated from:6031ad50a4. Checks:3 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	NOTE	169
linux-devel	NOTE	334
source / vignettes	OK	275
linux-release	NOTE	307

Exports:DropletMetadata MouseDropletData MouseSMARTseqData SMARTseqMetadata

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Overview of the MouseThymusAgeing datasets

Rendered fromMouseThymusAgeing.Rmdusingknitr::rmarkdown

Last update: 2021-03-30
Started: 2020-11-04

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Sample metadata from the Baran-Gale et al. ageing mouse thymus droplet experiments A data frame containing mouse age and sort-type information for the droplet single-cell RNA-sequencing experiment data sets	DropletMetadata
Mouse ageing thymus droplet single-cell RNA-sequencing data	MouseDropletData
Mouse ageing thymus SMART-seq2 single-cell RNA-sequencing data	MouseSMARTseqData
Sample metadata from the Baran-Gale et al. ageing mouse thymus	SMARTseqMetadata