Package: MouseFM 1.23.0

Matthias Munz

MouseFM: In-silico methods for genetic finemapping in inbred mice

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Authors:Matthias Munz [aut, cre], Inken Wohlers [aut], Hauke Busch [aut]

MouseFM_1.23.0.tar.gz
MouseFM_1.23.0.zip(r-4.7)MouseFM_1.23.0.zip(r-4.6)MouseFM_1.23.0.zip(r-4.5)
MouseFM_1.23.0.tgz(r-4.6-any)MouseFM_1.23.0.tgz(r-4.5-any)
MouseFM_1.23.0.tar.gz(r-4.7-any)MouseFM_1.23.0.tar.gz(r-4.6-any)
MouseFM_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MouseFM/json (API)

# Install 'MouseFM' in R:
install.packages('MouseFM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matmu/mousefm/issues

On BioConductor:MouseFM-1.23.0(bioc 3.24)MouseFM-1.22.0(bioc 3.23)

geneticssnpgenetargetvariantannotationgenomicvariationmultiplecomparisonsystemsbiologymathematicalbiologypatternlogicgenepredictionbiomedicalinformaticsfunctionalgenomicsfinemapgene-candidatesinbred-miceinbred-strainsmouseqtlqtl-mapping

5.38 score 6 scripts 1 mentions 15 exports 74 dependencies

Last updated from:af96744575. Checks:8 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE186
linux-devel-x86_64NOTE372
source / vignettesOK244
linux-release-x86_64NOTE389
macos-release-arm64NOTE307
macos-oldrel-arm64NOTE224
windows-develNOTE264
windows-releaseNOTE301
windows-oldrelNOTE396
wasm-releaseOK180

Exports:annotate_consequencesannotate_mouse_genesavail_chromosomesavail_consequencesavail_strainsdf2GRangesfetchfinemapget_topgetURLGRanges2dfprioref_genomesetURLvis_reduction_factors

Dependencies:AnnotationDbiaskpassBiobaseBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurldata.tableDBIdbplyrdplyrfarverfastmapfilelockgenericsGenomicRangesggplot2gluegtablegtoolshmshttrhttr2IRangesisobandjsonliteKEGGRESTlabelinglifecyclemagrittrmemoisemimeopensslpillarpkgconfigplyrpngprettyunitsprogresspurrrR6rappdirsRColorBrewerRcppreshape2rlangrlistRSQLiteS4VectorsS7scalesSeqinfostringistringrsystibbletidyrtidyselectutf8vctrsviridisLitewithrXMLxml2XVectoryaml

Fetch homozygous genotypes of inbred mouse strains
Introduction | Installation | Loading package | Example function calls | Output of Session Info
Rendered fromfetch.Rmdusingknitr::rmarkdown

Last update: 2020-06-08
Started: 2020-05-18

Finemapping of genetic regions in inbred mice
Introduction | Installation | Loading package | Example function calls | Output of Session Info
Rendered fromfinemap.Rmdusingknitr::rmarkdown

Last update: 2020-06-08
Started: 2020-05-18

Prioritization of inbred mouse strains for resolving genetic regions
Introduction | Installation | Loading package | Example function calls | Output of Session Info
Rendered fromprio.Rmdusingknitr::rmarkdown

Last update: 2020-06-08
Started: 2020-05-18