Package: MouseFM 1.23.0

Matthias Munz

MouseFM: In-silico methods for genetic finemapping in inbred mice

This package provides methods for genetic finemapping in inbred mice by taking advantage of their very high homozygosity rate (>95%).

Authors:Matthias Munz [aut, cre], Inken Wohlers [aut], Hauke Busch [aut]

MouseFM_1.23.0.tar.gz
MouseFM_1.23.0.zip(r-4.7-any)MouseFM_1.23.0.zip(r-4.6-any)MouseFM_1.23.0.zip(r-4.5-any)
MouseFM_1.23.0.tgz(r-4.6-any)MouseFM_1.23.0.tgz(r-4.5-any)
MouseFM_1.23.0.tar.gz(r-4.7-any)MouseFM_1.23.0.tar.gz(r-4.6-any)
MouseFM_1.23.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MouseFM/json (API)

# Install 'MouseFM' in R:
install.packages('MouseFM', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matmu/mousefm/issues

On BioConductor:MouseFM-1.23.0(bioc 3.24)MouseFM-1.22.0(bioc 3.23)

geneticssnpgenetargetvariantannotationgenomicvariationmultiplecomparisonsystemsbiologymathematicalbiologypatternlogicgenepredictionbiomedicalinformaticsfunctionalgenomicsfinemapgene-candidatesinbred-miceinbred-strainsmouseqtlqtl-mapping

3.78 score 10 scripts 504 downloads 1 mentions 15 exports 75 dependencies

Last updated from:af96744575. Checks:1 NOTE, 8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE160
linux-develERROR293
source / vignettesERROR201
linux-releaseERROR291
macos-releaseERROR193
macos-oldrelERROR175
windows-develERROR133
windows-releaseERROR174
windows-oldrelERROR154
wasm-releaseOK120

Exports:annotate_consequencesannotate_mouse_genesavail_chromosomesavail_consequencesavail_strainsdf2GRangesfetchfinemapget_topgetURLGRanges2dfprioref_genomesetURLvis_reduction_factors

Dependencies:AnnotationDbiaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbiomaRtBiostringsbitbit64blobcachemclicpp11crayoncurldata.tableDBIdbplyrdigestdplyrfarverfastmapfilelockgenericsGenomicRangesggplot2gluegtablegtoolshmshttrhttr2IRangesisobandjsonliteKEGGRESTlabelinglifecyclemagrittrmemoisemimeopensslpillarpkgconfigplyrpngprettyunitsprogresspurrrR6RColorBrewerRcppreshape2rlangrlistRSQLiteS4VectorsS7scalesSeqinfostringistringrsystibbletidyrtidyselectutf8vctrsviridisLitewithrXMLxml2XVectoryaml