Introduction | Quick Start | Beware of False Precision | References
Package: MotifDb 1.55.0
Paul Shannon
MotifDb: An Annotated Collection of Protein-DNA Binding Sequence Motifs
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
Authors:
MotifDb_1.55.0.tar.gz
MotifDb_1.55.0.zip(r-4.7-any)MotifDb_1.55.0.zip(r-4.6-any)MotifDb_1.55.0.zip(r-4.5-any)
MotifDb_1.55.0.tgz(r-4.6-any)MotifDb_1.55.0.tgz(r-4.5-any)
MotifDb_1.55.0.tar.gz(r-4.7-any)MotifDb_1.55.0.tar.gz(r-4.6-any)
MotifDb_1.55.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MotifDb/json (API)
| # Install 'MotifDb' in R: |
| install.packages('MotifDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MotifDb-1.55.0(bioc 3.24)MotifDb-1.54.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:b859f52857. Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 201 | ||
| linux-devel | WARNING | 374 | ||
| source / vignettes | OK | 263 | ||
| linux-release | WARNING | 377 | ||
| macos-release | WARNING | 224 | ||
| macos-oldrel | WARNING | 174 | ||
| windows-devel | WARNING | 267 | ||
| windows-release | WARNING | 258 | ||
| windows-oldrel | WARNING | 247 | ||
| wasm-release | OK | 147 |
Exports:associateTranscriptionFactorsexportgeneToMotifMotifDbmotifToGenequeryshowsubset
Dependencies:askpassBHBiocBaseUtilsBiocGenericsBiocIOBiocParallelBiostringsbitopscigarillocodetoolscpp11crayoncurldata.tableformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4VectorsSeqinfosnowsplitstackshapesysXMLXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| associateTranscriptionFactors | associateTranscriptionFactors associateTranscriptionFactors,MotifList-method |
| export | export export,MotifList,character,character-method export,MotifList,connection,character-method export,MotifList,missing,character-method |
| geneToMotif | geneToMotif geneToMotif,MotifList-method |
| MotifDb: An Annotated Collection of DNA-binding sequence motifs | MotifDb-package MotifDb |
| MotifList | class:MotifList MotifList-class show,MotifList-method |
| motifToGene | motifToGene motifToGene,MotifList-method |
| query | query query,MotifList-method |
| subset | subset,MotifList-method |
