Package: MotifDb 1.49.0
Paul Shannon
MotifDb: An Annotated Collection of Protein-DNA Binding Sequence Motifs
More than 9900 annotated position frequency matrices from 14 public sources, for multiple organisms.
Authors:
MotifDb_1.49.0.tar.gz
MotifDb_1.49.0.zip(r-4.5)MotifDb_1.49.0.zip(r-4.4)MotifDb_1.49.0.zip(r-4.3)
MotifDb_1.49.0.tgz(r-4.4-any)MotifDb_1.49.0.tgz(r-4.3-any)
MotifDb_1.49.0.tar.gz(r-4.5-noble)MotifDb_1.49.0.tar.gz(r-4.4-noble)
MotifDb_1.49.0.tgz(r-4.4-emscripten)MotifDb_1.49.0.tgz(r-4.3-emscripten)
MotifDb.pdf |MotifDb.html✨
MotifDb/json (API)
NEWS
| # Install 'MotifDb' in R: |
| install.packages('MotifDb', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MotifDb-1.47.0(bioc 3.20)MotifDb-1.46.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 23 days agofrom:c4cd303741. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | WARNING | Oct 31 2024 |
| R-4.5-linux | WARNING | Oct 30 2024 |
| R-4.4-win | WARNING | Oct 31 2024 |
| R-4.4-mac | WARNING | Oct 31 2024 |
| R-4.3-win | WARNING | Oct 31 2024 |
| R-4.3-mac | WARNING | Oct 31 2024 |
Exports:associateTranscriptionFactorsexportgeneToMotifMotifDbmotifToGenequeryshowsubset
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopscodetoolscpp11crayoncurldata.tableDelayedArrayformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangeshttrIRangesjsonlitelambda.rlatticeMatrixMatrixGenericsmatrixStatsmimeopensslR6RCurlrestfulrRhtslibrjsonRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraysplitstackshapeSummarizedExperimentsysUCSC.utilsXMLXVectoryamlzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| associateTranscriptionFactors | associateTranscriptionFactors associateTranscriptionFactors,MotifList-method |
| export | export export,MotifList,character,character-method export,MotifList,connection,character-method export,MotifList,missing,character-method |
| geneToMotif | geneToMotif geneToMotif,MotifList-method |
| MotifDb: An Annotated Collection of DNA-binding sequence motifs | MotifDb-package MotifDb |
| MotifList | class:MotifList MotifList-class show,MotifList-method |
| motifToGene | motifToGene motifToGene,MotifList-method |
| query | query query,MotifList-method |
| subset | subset,MotifList-method |
