NEWS

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MotifDb 1.30

NEW FEATURES

• now has HOCOMOCO version 11, with all motifs classified, and queryable, by category ("core", "secondary") and reliability (A, B, C, D).

MotifDb 1.24

NEW FEATURES

• query method now flexible, with "andStrings", "orStrings", "notStrings" parameters The previous usage style is still supported. See man page.
• associateTranscriptionFactors (with motifs) substantially faster

MotifDb 1.20

NEW FEATURES

• Now 13 sources, 52 organisms and 8369 motifs
• New sources: HOCOMOCOv10, HOMER, jaspar2016, SwissRegulon
• New methods: motifToGene, geneToMotif, associateTranscriptionFactors

SIGNIFICANT USER-VISIBLE CHANGES

• The new methods mentioned above provide both strict and permissive mapping from motifs to their cognate transcription factors, thus supporting reproducible regulatory network construction.

MotifDb 1.5.9

NEW FEATURES

• JASPAR_2014 added, with 592 motifs

MotifDb 1.1.3

NEW FEATURES

• 683 new motifs derived from DGF (digital genome footprinting) from the stamlab (http://www.stamlab.org/) added. Each is identified as either 'knownMotif' or 'novelMotif'