Package: MethylAidData 1.45.0

M. van Iterson

MethylAidData: MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples

A data package containing summarized Illumina 450k array data on 2800 samples and summarized EPIC data for 2620 samples. The data can be use as a background data set in the interactive application.

Authors:Davy Cats, Tyler J. Gorrie-Stone, Bastiaan T. Heijmans, John W. Holloway, BIOS Consortium, Maarten van Iterson, Faisal I. Rezwam, Leonard Schalkwyk

MethylAidData_1.45.0.tar.gz
MethylAidData_1.45.0.tar.gz(r-4.7-any)MethylAidData_1.45.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MethylAidData/json (API)

# Install 'MethylAidData' in R:

install.packages('MethylAidData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

exampleDataLarge - SummarizedData object on 2800 450k Human Methylation samples
MethylAidDataEPIC - SummarizedData object for 2620 EPIC Human Methylation samples

On BioConductor:MethylAidData-1.45.0(data/experiment 3.24)MethylAidData-1.44.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata technologydata microarraydata methylationarraydata datapkg

3.30 score 9 scripts 0 exports 163 dependencies

Last updated from:bd179cec57. Checks:1 ERROR, 3 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	356
linux-devel	OK	622
source / vignettes	OK	906
linux-release	OK	622

Exports:

Dependencies:abind annotate AnnotationDbi askpass base64 base64enc beanplot BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocIO biocmake BiocParallel Biostrings bit bit64 bitops blob bslib bumphunter cachem cigarillo cli clipr codetools commonmark cpp11 crayon curl data.table DBI dbplyr DelayedArray DelayedMatrixStats digest dir.expiry doRNG dplyr farver fastmap filelock fontawesome foreach formatR fs futile.logger futile.options genefilter generics GenomicAlignments GenomicFeatures GenomicRanges GEOquery ggplot2 glue gridBase gtable h5mread HDF5Array hexbin hms htmltools httpuv httr httr2 illuminaio IRanges isoband iterators jquerylib jsonlite KEGGREST labeling lambda.r later lattice lifecycle limma locfit magrittr MASS Matrix MatrixGenerics matrixStats mclust memoise MethylAid mime minfi multtest nlme nor1mix openssl otel pillar pkgconfig plyr png preprocessCore prettyunits progress promises purrr quadprog R.methodsS3 R.oo R.utils R6 rappdirs RColorBrewer Rcpp RCurl readr rentrez reshape restfulr rhdf5 rhdf5filters Rhdf5lib Rhtslib rjson rlang rngtools Rsamtools RSQLite rtracklayer rvest S4Arrays S4Vectors S7 sass scales scrime selectr Seqinfo shiny siggenes snow sourcetools SparseArray sparseMatrixStats statmod stringi stringr SummarizedExperiment survival sys tibble tidyr tidyselect tzdb utf8 vctrs viridisLite vroom withr XML xml2 xtable XVector yaml

MethylAid-summarized data on 2800 Illumina 450k array samples

1 Introduction | 2 Preparation of the data | 3 Using MethylAidData

Rendered fromMethylAidData.Rnwusingknitr::knitr

Last update: 2018-03-24
Started: 2015-04-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
summarizedData object on 2800 450k Human Methylation samples	exampleDataLarge
summarizedData object for 2620 EPIC Human Methylation samples	MethylAidDataEPIC