Package: MetaGxPancreas 1.33.0
MetaGxPancreas: Transcriptomic Pancreatic Cancer Datasets
A collection of pancreatic Cancer transcriptomic datasets that are part of the MetaGxData package compendium. This package contains multiple pancreas cancer datasets that have been downloaded from various resources and turned into SummarizedExperiment objects. The details of how the authors normalized the data can be found in the experiment data section of the objects. Additionally, the location the data was obtained from can be found in the url variables of the experiment data portion of each SE.
Authors:
MetaGxPancreas_1.33.0.tar.gz
MetaGxPancreas_1.33.0.tar.gz(r-4.7-any)MetaGxPancreas_1.33.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MetaGxPancreas/json (API)
| # Install 'MetaGxPancreas' in R: |
| install.packages('MetaGxPancreas', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MetaGxPancreas-1.33.0(data/experiment 3.24)MetaGxPancreas-1.32.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
expressiondataexperimenthubcancerdatahomo_sapiens_dataarrayexpressgeoncimicroarraydataexperimentdatasequencingdatadatapkg
Last updated from:006b935da6. Checks:3 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 161 | ||
| linux-devel | NOTE | 320 | ||
| source / vignettes | OK | 223 | ||
| linux-release | NOTE | 336 |
Exports:loadPancreasDatasets
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrExperimentHubfastmapfilelockgenericsGenomicRangesgluehttrhttr2imputeIRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4ArraysS4VectorsSeqinfoSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Function to load pancreas cancer expression profiles from the Experiment Hub | loadPancreasDatasets |
