Package: MetaGxBreast 1.33.0
Benjamin Haibe-Kains
MetaGxBreast: Transcriptomic Breast Cancer Datasets
A collection of Breast Cancer Transcriptomic Datasets that are part of the MetaGxData package compendium.
Authors:
MetaGxBreast_1.33.0.tar.gz
MetaGxBreast_1.33.0.tar.gz(r-4.7-any)MetaGxBreast_1.33.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MetaGxBreast/json (API)
| # Install 'MetaGxBreast' in R: |
| install.packages('MetaGxBreast', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MetaGxBreast-1.33.0(data/experiment 3.24)MetaGxBreast-1.32.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
expressiondataexperimenthubcancerdatahomo_sapiens_dataarrayexpressgeoncimicroarraydataexperimentdatadatapkg
Last updated from:8d29f74428. Checks:1 ERROR, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 158 | ||
| linux-devel | OK | 310 | ||
| source / vignettes | OK | 260 | ||
| linux-release | OK | 320 |
Exports:loadBreastDatasetsloadBreastEsets
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydplyrExperimentHubfastmapfilelockgenericsGenomicRangesgluehttrhttr2imputeIRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrlangRSQLiteS4ArraysS4VectorsSeqinfoSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| CAL | CAL |
| DFHCC | DFHCC |
| DFHCC2 | DFHCC2 |
| DFHCC3 | DFHCC3 |
| DUKE | DUKE |
| DUKE2 | DUKE2 |
| a list containing the names of patients that are believed to be dulicates across datasets | dupplicates |
| EMC2 | EMC2 |
| EORTC10994 | EORTC10994 |
| EXPO | EXPO |
| FNCLCC | FNCLCC |
| GSE25066 | GSE25066 |
| GSE32646 | GSE32646 |
| GSE48091 | GSE48091 |
| GSE58644 | GSE58644 |
| HLP | HLP |
| IRB | IRB |
| KOO | KOO |
| Function to load breast cancer SummarizedExperiment objects from the Experiment Hub | loadBreastDatasets |
| Function to load breast cancer expression sets from the Experiment Hub | loadBreastEsets |
| LUND | LUND |
| LUND2 | LUND2 |
| MAINZ | MAINZ |
| MAQC2 | MAQC2 |
| MCCC | MCCC |
| MDA4 | MDA4 |
| METABRIC | METABRIC |
| MSK | MSK |
| MUG | MUG |
| NCCS | NCCS |
| NCI | NCI |
| NKI | NKI |
| PNC | PNC |
| STK | STK |
| STNO2 | STNO2 |
| TCGA | TCGA |
| TRANSBIG | TRANSBIG |
| UCSF | UCSF |
| UNC4 | UNC4 |
| UNT | UNT |
| UPP | UPP |
| VDX | VDX |