Example 1: Local Cytometry Datasets. | Step 1: data collection | Step 2: data preprocessing | step 3: Identification of common clusters across studies | Step 4: Statistical analysis | Example 2: Data collection for ImmPort datasets
Package: MetaCyto 1.35.0
Zicheng Hu
MetaCyto: MetaCyto: A package for meta-analysis of cytometry data
This package provides functions for preprocessing, automated gating and meta-analysis of cytometry data. It also provides functions that facilitate the collection of cytometry data from the ImmPort database.
Authors:
MetaCyto_1.35.0.tar.gz
MetaCyto_1.35.0.zip(r-4.7)MetaCyto_1.35.0.zip(r-4.6)MetaCyto_1.35.0.zip(r-4.5)
MetaCyto_1.35.0.tgz(r-4.6-any)MetaCyto_1.35.0.tgz(r-4.5-any)
MetaCyto_1.35.0.tar.gz(r-4.7-any)MetaCyto_1.35.0.tar.gz(r-4.6-any)
MetaCyto_1.35.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MetaCyto/json (API)
| # Install 'MetaCyto' in R: |
| install.packages('MetaCyto', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MetaCyto-1.35.0(bioc 3.24)MetaCyto-1.34.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologycellbiologyflowcytometryclusteringstatisticalmethodsoftwarecellbasedassayspreprocessing
Last updated from:f001b78009. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 177 | ||
| linux-devel-x86_64 | NOTE | 409 | ||
| source / vignettes | OK | 363 | ||
| linux-release-x86_64 | NOTE | 447 | ||
| macos-release-arm64 | NOTE | 333 | ||
| macos-oldrel-arm64 | NOTE | 292 | ||
| windows-devel | NOTE | 364 | ||
| windows-release | NOTE | 367 | ||
| windows-oldrel | NOTE | 371 | ||
| wasm-release | OK | 159 |
Exports:autoCluster.batchclusterStatscollectDatadensityPlotfcsInfoParserfilterLabelsfindCutoffflowHCflowSOM.MCglmAnalysislabelClusterlabelSummarymarkerFindermetaAnalysisnameUpdatorpanelSummaryplotGApreprocessingpreprocessing.batchsampleInfoParsersearchClustersearchCluster.batchset2Frame
Dependencies:abindALLbackportsbase64encBHBiobaseBiocGenericsbiocmakebootbroomcarcarDatacliclustercolorRampscolorspaceConsensusClusterPluscorrplotcowplotcpp11cytolibDerivdigestdir.expirydoBydplyrfarverfastclusterfilelockflowCoreFlowSOMforecastFormulafracdiffgenericsggforceggnewscaleggplot2ggpubrggrepelggsciggsignifgluegridExtragtableigraphisobandjsonlitelabelinglatticelifecyclelme4lmtestmagrittrMASSmathjaxrMatrixMatrixModelsmatrixStatsmetadatmetaformgcvminqamodelrnlmenloptrnnetnumDerivpbapplypbkrtestpillarpkgconfigpolyclippolynompurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasRhdf5librlangRProtoBufLibrstatixRtsneS4VectorsS7scalesSparseMstringistringrsurvivalsystemfontstibbletidyrtidyselecttimeDatetweenrurcautf8vctrsviridisLitewithrXMLzoo
