Package: MassSpecWavelet 1.79.2

Sergio Oller Moreno

MassSpecWavelet: Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.

Authors:Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

MassSpecWavelet_1.79.2.tar.gz
MassSpecWavelet_1.79.2.zip(r-4.7-x86_64)MassSpecWavelet_1.79.2.zip(r-4.7-arm64)MassSpecWavelet_1.79.2.zip(r-4.6-x86_64)MassSpecWavelet_1.79.2.zip(r-4.6-arm64)MassSpecWavelet_1.79.2.zip(r-4.5-x86_64)
MassSpecWavelet_1.79.2.tgz(r-4.6-x86_64)MassSpecWavelet_1.79.2.tgz(r-4.6-arm64)MassSpecWavelet_1.79.2.tgz(r-4.5-x86_64)MassSpecWavelet_1.79.2.tgz(r-4.5-arm64)
MassSpecWavelet_1.79.2.tar.gz(r-4.7-arm64)MassSpecWavelet_1.79.2.tar.gz(r-4.7-x86_64)MassSpecWavelet_1.79.2.tar.gz(r-4.6-arm64)MassSpecWavelet_1.79.2.tar.gz(r-4.6-x86_64)
MassSpecWavelet_1.79.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MassSpecWavelet/json (API)

# Install 'MassSpecWavelet' in R:
install.packages('MassSpecWavelet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zeehio/massspecwavelet/issues

Datasets:

On BioConductor:MassSpecWavelet-1.79.2(bioc 3.24)MassSpecWavelet-1.78.2(bioc 3.23)

immunooncologymassspectrometryproteomicspeakdetection

10.14 score 11 stars 23 packages 53 scripts 5.4k downloads 19 mentions 13 exports 0 dependencies

Last updated from:1665dd8ea2. Checks:1 WARNING, 13 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING127
linux-devel-arm64NOTE120
linux-devel-x86_64NOTE262
source / vignettesOK238
linux-release-arm64NOTE122
linux-release-x86_64NOTE250
macos-release-arm64NOTE110
macos-release-x86_64NOTE281
macos-oldrel-arm64NOTE133
macos-oldrel-x86_64NOTE327
windows-devel-arm64NOTE218
windows-devel-x86_64NOTE159
windows-release-arm64NOTE221
windows-release-x86_64NOTE73
windows-oldrel-x86_64NOTE88
wasm-releaseOK84

Exports:cwtgetLocalMaximumCWTgetRidgegetRidgeLengthidentifyMajorPeakslocalMaximummexhpeakDetectionCWTplotLocalMaxplotPeakplotRidgeListprepareWaveletstuneInPeakInfo

Dependencies:

Using the MassSpecWavelet package
Version Info | Overview of MassSpecWavelet | Peak detection by using CWT-based pattern matching | Continuous wavelet transform with Mexican Hat wavelet | Peak identification process | Refine the peak parameter estimation | Future Extension | Acknowledgments | Session Information
Rendered fromMassSpecWavelet.Rmdusingknitr::rmarkdown

Last update: 2023-01-30
Started: 2022-04-04

Finding local maxima with MassSpecWavelet
Introduction | Problems with the classic algorithm | The new local maximum algorithm | Computational cost | Comparison on a real signal | Session Information
Rendered fromFindingLocalMaxima.Rmdusingknitr::rmarkdown

Last update: 2022-10-10
Started: 2022-10-06