Package: MassSpecWavelet 1.79.0

Sergio Oller Moreno

MassSpecWavelet: Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See <doi:10.1093/bioinformatics/btl355} for further details.

Authors:Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

MassSpecWavelet_1.79.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
MassSpecWavelet/json (API)
NEWS

# Install 'MassSpecWavelet' in R:
install.packages('MassSpecWavelet', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/zeehio/massspecwavelet/issues

Datasets:

On BioConductor:MassSpecWavelet-1.79.0(bioc 3.24)MassSpecWavelet-1.78.0(bioc 3.23)

immunooncologymassspectrometryproteomicspeakdetection

9.57 score 11 stars 21 packages 47 scripts 4.0k downloads 19 mentions 13 exports 0 dependencies

Last updated from:1f98dde437. Checks:1 WARNING, 13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING153
linux-devel-arm64OK134
linux-devel-x86_64OK182
source / vignettesOK195
linux-release-arm64OK152
linux-release-x86_64OK144
macos-release-arm64OK86
macos-release-x86_64OK337
macos-oldrel-arm64OK76
macos-oldrel-x86_64OK339
windows-develOK103
windows-releaseOK116
windows-oldrelOK99
wasm-releaseOK92

Exports:cwtgetLocalMaximumCWTgetRidgegetRidgeLengthidentifyMajorPeakslocalMaximummexhpeakDetectionCWTplotLocalMaxplotPeakplotRidgeListprepareWaveletstuneInPeakInfo

Dependencies:

Finding local maxima with MassSpecWavelet

Sergio Oller

Rendered fromFindingLocalMaxima.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2022-10-10
Started: 2022-10-06

Using the MassSpecWavelet package

Pan Du, Warren A. Kibbe, Simon Lin

Rendered fromMassSpecWavelet.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2023-01-30
Started: 2022-04-04