Package: Macarron 1.9.1
Sagun Maharjan
Macarron: Prioritization of potentially bioactive metabolic features from epidemiological and environmental metabolomics datasets
Macarron is a workflow for the prioritization of potentially bioactive metabolites from metabolomics experiments. Prioritization integrates strengths of evidences of bioactivity such as covariation with a known metabolite, abundance relative to a known metabolite and association with an environmental or phenotypic indicator of bioactivity. Broadly, the workflow consists of stratified clustering of metabolic spectral features which co-vary in abundance in a condition, transfer of functional annotations, estimation of relative abundance and differential abundance analysis to identify associations between features and phenotype/condition.
Authors:
Macarron_1.9.1.tar.gz
Macarron_1.9.1.zip(r-4.5)Macarron_1.9.1.zip(r-4.4)Macarron_1.9.1.zip(r-4.3)
Macarron_1.9.1.tgz(r-4.4-any)Macarron_1.9.1.tgz(r-4.3-any)
Macarron_1.9.1.tar.gz(r-4.5-noble)Macarron_1.9.1.tar.gz(r-4.4-noble)
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Macarron.pdf |Macarron.html✨
Macarron/json (API)
NEWS
| # Install 'Macarron' in R: |
| install.packages('Macarron', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:Macarron-1.9.0(bioc 3.20)Macarron-1.8.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 15 days agofrom:ba27b060ae
Exports:calAVAcalEScalQvaldecorateIDfindMacModMacarronmakeDisMatprepInputprioritizeshowBest
Dependencies:abindAnnotationDbiaskpassbackportsbase64encBHbiglmBiobaseBiocGenericsBiocParallelBiostringsbitbit64bitopsblobbootbroombslibcachemcarcarDatacaToolscheckmatechemometricsclasscliclustercodacodetoolscolorspacecplmcpp11crayoncurldata.tableDBIDelayedArrayDEoptimRdigestdoParalleldplyrdynamicTreeCute1071edgeRevaluatefansifarverfastclusterfastmapfffontawesomeforeachforeignformatRFormulafsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesgetoptggplot2glmmTMBglmnetglueGO.dbgplotsgridExtragtablegtoolshashhighrHmischtmlTablehtmltoolshtmlwidgetshttrimputeIRangesisobanditeratorsjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlarslatticelifecyclelimmalme4lmerTestlocfitloggingMaaslin2magrittrMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmclustmemoisemetagenomeSeqmgcvmimeminqamnormtmunsellmvtnormnlmenloptrnnetnumDerivopenssloptparsepbapplypbkrtestpcaPPpermutepheatmappillarpkgconfigplogrplsplyrpngpreprocessCoreproxypsclpsychpurrrquantregR6rappdirsRColorBrewerRcppRcppEigenreshape2RJSONIOrlangrmarkdownrobustbaserpartRSQLiterstudioapiS4ArraysS4VectorssassscalesshapesnowsomSparseArraySparseMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttinytexTMBtweedieUCSC.utilsutf8vctrsveganviridisviridisLiteWGCNAwithrWrenchxfunxml2XVectoryamlzlibbioc
