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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Macarron" in publications use:'
type: software
license: MIT
title: 'Macarron: Prioritization of potentially bioactive metabolic features from
  epidemiological and environmental metabolomics datasets'
version: 1.9.1
doi: 10.1038/s44320-024-00027-8
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Macarron
- type: url
  value: http://huttenhower.sph.harvard.edu/macarron
abstract: Macarron is a workflow for the prioritization of potentially bioactive metabolites
  from metabolomics experiments. Prioritization integrates strengths of evidences
  of bioactivity such as covariation with a known metabolite, abundance relative to
  a known metabolite and association with an environmental or phenotypic indicator
  of bioactivity. Broadly, the workflow consists of stratified clustering of metabolic
  spectral features which co-vary in abundance in a condition, transfer of functional
  annotations, estimation of relative abundance and differential abundance analysis
  to identify associations between features and phenotype/condition.
authors:
- family-names: Bhosle
  given-names: Amrisha
  email: abhosle@broadinstitute.org
- family-names: Geistlinger
  given-names: Ludwig
  email: Ludwig_Geistlinger@hms.harvard.edu
- family-names: Maharjan
  given-names: Sagun
  email: sagunmaharjann@gmail.com
preferred-citation:
  type: article
  title: Integrated annotation prioritizes metabolites with bioactivity in inflammatory
    bowel disease
  authors:
  - family-names: Bhosle
    given-names: Amrisha
    email: abhosle@broadinstitute.org
  - family-names: Bae
    given-names: Sena
  - family-names: Zhang
    given-names: Yancong
  - family-names: Chun
    given-names: Eunyoung
  - family-names: Avila-Pacheco
    given-names: Julian
  - family-names: Geistlinger
    given-names: Ludwig
    email: Ludwig_Geistlinger@hms.harvard.edu
  - family-names: Pishchany
    given-names: Gleb
  - family-names: Glickman
    given-names: Jonathan N
  - family-names: Michaud
    given-names: Monia
  - family-names: Waldron
    given-names: Levi
  - family-names: Clish
    given-names: Clary B
  - family-names: Xavier
    given-names: Ramnik J
  - family-names: Vlamakis
    given-names: Hera
  - family-names: Franzosa
    given-names: Eric A
  - family-names: Garrett
    given-names: Wendy S
  - family-names: Huttenhower
    given-names: Curtis
  year: '2024'
  journal: Molecular Systems Biology
  doi: 10.1038/s44320-024-00027-8
repository: https://bioc.r-universe.dev
commit: ba27b060ae2b6a2bdf2923e5b28d5a8d2eb9ba29
url: https://forum.biobakery.org/c/microbial-community-profiling/macarron
contact:
- family-names: Maharjan
  given-names: Sagun
  email: sagunmaharjann@gmail.com