Package: MSstatsQC 2.31.0

Eralp Dogu

MSstatsQC: Longitudinal system suitability monitoring and quality control for proteomic experiments

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Authors:Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]

MSstatsQC_2.31.0.tar.gz
MSstatsQC_2.31.0.zip(r-4.7)MSstatsQC_2.31.0.zip(r-4.6)MSstatsQC_2.31.0.zip(r-4.5)
MSstatsQC_2.31.0.tgz(r-4.6-any)MSstatsQC_2.31.0.tgz(r-4.5-any)
MSstatsQC_2.31.0.tar.gz(r-4.7-any)MSstatsQC_2.31.0.tar.gz(r-4.6-any)
MSstatsQC_2.31.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MSstatsQC/json (API)
NEWS

# Install 'MSstatsQC' in R:
install.packages('MSstatsQC', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • QCloudDDA - DDA QC data from QCloud System
  • QCloudSRM - SRM QC data from QCloud System
  • QuiCDIA - DIA iRT data from QuiC System
  • S9Site54 - CPTAC study 9.1 site 54 dataset

On BioConductor:MSstatsQC-2.31.0(bioc 3.24)MSstatsQC-2.30.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

softwarequalitycontrolproteomicsmassspectrometrynormalization

4.78 score 1 packages 8 scripts 454 downloads 1 mentions 14 exports 187 dependencies

Last updated from:bcf15f3c9f. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE283
linux-devel-x86_64WARNING543
source / vignettesOK376
linux-release-x86_64WARNING482
macos-release-arm64WARNING288
macos-oldrel-arm64WARNING227
windows-develWARNING557
windows-releaseWARNING568
windows-oldrelWARNING565
wasm-releaseOK219

Exports:ChangePointEstimatorCUSUMChartDataProcessDecisionMapMissingDataMapMSnbaseToMSstatsQCMSstatsQC.ML.deployRMSstatsQC.ML.sim.size.detectRMSstatsQC.ML.trainRmzQCToMSstatsQCRadarPlotRemoveMissingRiverPlotXmRChart

Dependencies:abindaffyaffyioAnnotationFilteraskpassbackportsbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocManagerBiocParallelbitopsbootbroombslibcachemcarcarDatacliclueclustercodetoolscolorspacecolourpickercombinatcommonmarkconf.designcowplotcpp11crosstalkcurldata.tableDelayedArrayDerivdigestdir.expirydoByDoE.basedoParalleldplyrevaluatefarverfastmapfilelockfontawesomeforeachforecastformatRFormulafracdiffFrF2fsfutile.loggerfutile.optionsgenericsGenomicRangesggExtraggplot2gluegmpgtableh2ohighrhtmltoolshtmlwidgetshttpuvhttrigraphimputeIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclelimmalme4lmtestmagrittrMALDIquantMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoiseMetaboCoreUtilsmgcvmicrobenchmarkmimeminiUIminqamodelrMsCoreUtilsMSnbaseMultiAssayExperimentmzIDmzRncdf4nlmenloptrnnetnumbersnumDerivopensslotelpanderpartitionspbkrtestpcaMethodspillarpkgconfigplotlyplyrpolynompreprocessCorepromisesProtGenericsPSMatchPTModspurrrqcmetricsQFeaturesquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRCurlRdpackreformulasreshape2Rhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesscatterplot3dSeqinfosetssfsmiscshinyshinyjssnowsourcetoolsSparseArraySparseMSpectrastatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimeDatetinytexurcautf8vcdvctrsviridisLitevsnwithrxfunXMLxtableXVectoryamlzoo

Longitudinal System Suitability Monitoring and Quality Control with MSstatsQC

Eralp Dogu [email protected], Sara Taheri [email protected], Olga Vitek [email protected]

Rendered fromMSstatsQC.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-02-07
Started: 2017-06-20