MSstatsBig Package Description | Dataset description | Run MSstatsBig converter | Remaining workflow | Session info | References
Package: MSstatsBig 1.11.0
Anthony Wu
MSstatsBig: MSstats Preprocessing for Larger than Memory Data
MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.
Authors:
MSstatsBig_1.11.0.tar.gz
MSstatsBig_1.11.0.zip(r-4.7)MSstatsBig_1.11.0.zip(r-4.6)MSstatsBig_1.11.0.zip(r-4.5)
MSstatsBig_1.11.0.tgz(r-4.6-any)MSstatsBig_1.11.0.tgz(r-4.5-any)
MSstatsBig_1.11.0.tar.gz(r-4.7-any)MSstatsBig_1.11.0.tar.gz(r-4.6-any)
MSstatsBig_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MSstatsBig/json (API)
| # Install 'MSstatsBig' in R: |
| install.packages('MSstatsBig', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MSstatsBig-1.11.0(bioc 3.24)MSstatsBig-1.10.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
massspectrometryproteomicssoftware
Last updated from:ce69a87a90. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 175 | ||
| linux-devel-x86_64 | NOTE | 223 | ||
| source / vignettes | OK | 224 | ||
| linux-release-x86_64 | NOTE | 228 | ||
| macos-release-arm64 | NOTE | 141 | ||
| macos-oldrel-arm64 | NOTE | 158 | ||
| windows-devel | NOTE | 120 | ||
| windows-release | NOTE | 129 | ||
| windows-oldrel | NOTE | 128 | ||
| wasm-release | OK | 173 |
Exports:bigDIANNtoMSstatsFormatbigFragPipetoMSstatsFormatbigSpectronauttoMSstatsFormatMSstatsAddAnnotationBigMSstatsPreprocessBig
Dependencies:arrowaskpassassertthatbackportsbase64encbitbit64bitopsblobbootbslibcachemcaToolscheckmateclicliprcodetoolsconfigcpp11crayoncrosstalkcurldata.tableDBIdbplyrdigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2ggrepelglobalsgluegplotsgtablegtoolshighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalme4log4rmagrittrmarrayMASSMatrixmemoisemimeminqaMSstatsMSstatsConvertnlmenloptropensslotelpillarpkgconfigplotlypreprocessCoreprettyunitsprogresspromisespurrrR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasrlangrmarkdownrstudioapiS7sassscalessparklyrstatmodstringistringrsurvivalsystibbletidyrtidyselecttinytextzdbutf8uuidvctrsviridisLitevroomwithrxfunxml2yaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Convert out-of-memory DIANN files to MSstats format. | bigDIANNtoMSstatsFormat |
| Convert out-of-memory FragPipe files to MSstats format. | bigFragPipetoMSstatsFormat |
| Convert out-of-memory Spectronaut files to MSstats format. | bigSpectronauttoMSstatsFormat |
| Merge annotation to output of MSstatsPreprocessBig | MSstatsAddAnnotationBig |
| General converter for larger-than-memory csv files in MSstats format 10-column format | MSstatsPreprocessBig |
