Package: MSstatsBig 1.11.0

Anthony Wu

MSstatsBig: MSstats Preprocessing for Larger than Memory Data

MSstats package provide tools for preprocessing, summarization and differential analysis of mass spectrometry (MS) proteomics data. Recently, some MS protocols enable acquisition of data sets that result in larger than memory quantitative data. MSstats functions are not able to process such data. MSstatsBig package provides additional converter functions that enable processing larger than memory data sets.

Authors:Anthony Wu [aut, cre], Mateusz Staniak [aut], Devon Kohler [aut]

MSstatsBig_1.11.0.tar.gz
MSstatsBig_1.11.0.zip(r-4.7)MSstatsBig_1.11.0.zip(r-4.6)MSstatsBig_1.11.0.zip(r-4.5)
MSstatsBig_1.11.0.tgz(r-4.6-any)MSstatsBig_1.11.0.tgz(r-4.5-any)
MSstatsBig_1.11.0.tar.gz(r-4.7-any)MSstatsBig_1.11.0.tar.gz(r-4.6-any)
MSstatsBig_1.11.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MSstatsBig/json (API)

# Install 'MSstatsBig' in R:
install.packages('MSstatsBig', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MSstatsBig-1.11.0(bioc 3.24)MSstatsBig-1.10.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

massspectrometryproteomicssoftware

5.00 score 1 packages 11 scripts 302 downloads 5 exports 115 dependencies

Last updated from:ce69a87a90. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR185
linux-devel-x86_64NOTE344
source / vignettesOK251
linux-release-x86_64NOTE243
macos-release-arm64NOTE141
macos-oldrel-arm64NOTE153
windows-develNOTE139
windows-releaseNOTE130
windows-oldrelNOTE169
wasm-releaseOK141

Exports:bigDIANNtoMSstatsFormatbigFragPipetoMSstatsFormatbigSpectronauttoMSstatsFormatMSstatsAddAnnotationBigMSstatsPreprocessBig

Dependencies:arrowaskpassassertthatbackportsbase64encbitbit64bitopsblobbootbslibcachemcaToolscheckmateclicliprcodetoolsconfigcpp11crayoncrosstalkcurldata.tableDBIdbplyrdigestdplyrevaluatefarverfastmapfontawesomefsgenericsggplot2ggrepelglobalsgluegplotsgtablegtoolshighrhmshtmltoolshtmlwidgetshttrisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelimmalme4log4rmagrittrmarrayMASSMatrixmemoisemimeminqaMSstatsMSstatsConvertnlmenloptropensslotelpillarpkgconfigplotlypreprocessCoreprettyunitsprogresspromisespurrrR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreformulasrlangrmarkdownrstudioapiS7sassscalessparklyrstatmodstringistringrsurvivalsystibbletidyrtidyselecttinytextzdbutf8uuidvctrsviridisLitevroomwithrxfunxml2yaml

MSstatsBig Workflow

Devon Kohler ([email protected])

Rendered fromMSstatsBig_Workflow.Rmdusingknitr::rmarkdownon May 28 2026.

Last update: 2024-04-03
Started: 2023-11-29