Package: MPFE 1.43.0
Conrad Burden
MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.
Authors:
MPFE_1.43.0.tar.gz
MPFE_1.43.0.zip(r-4.5)MPFE_1.43.0.zip(r-4.4)MPFE_1.43.0.zip(r-4.3)
MPFE_1.43.0.tgz(r-4.5-any)MPFE_1.43.0.tgz(r-4.4-any)MPFE_1.43.0.tgz(r-4.3-any)
MPFE_1.43.0.tar.gz(r-4.5-noble)MPFE_1.43.0.tar.gz(r-4.4-noble)
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MPFE.pdf |MPFE.html✨
MPFE/json (API)
| # Install 'MPFE' in R: |
| install.packages('MPFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- patternsExample - PatternsExample
On BioConductor:MPFE-1.43.0(bioc 3.21)MPFE-1.42.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
highthroughputsequencingdatadnamethylationmethylseq
Last updated 4 months agofrom:939ad78f81. Checks:1 OK, 7 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 13 2025 |
| R-4.5-win | NOTE | Feb 13 2025 |
| R-4.5-mac | NOTE | Feb 13 2025 |
| R-4.5-linux | NOTE | Feb 13 2025 |
| R-4.4-win | NOTE | Feb 13 2025 |
| R-4.4-mac | NOTE | Feb 13 2025 |
| R-4.3-win | NOTE | Feb 13 2025 |
| R-4.3-mac | NOTE | Feb 13 2025 |
Exports:estimatePatternspatternMapplotPatterns
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| MPFE | MPFE-package MPFE |
| Estimate distribution of methylation patterns | estimatePatterns |
| Plot a representation of the patterns and their frequencies | patternMap |
| patternsExample | patternsExample |
| Plot methylation pattern distribution | plotPatterns |
