Package: MPFE 1.49.0

Conrad Burden

MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Authors:Peijie Lin, Sylvain Foret, Conrad Burden

MPFE_1.49.0.tar.gz
MPFE_1.49.0.zip(r-4.7)MPFE_1.49.0.zip(r-4.6)MPFE_1.49.0.zip(r-4.5)
MPFE_1.49.0.tgz(r-4.6-any)MPFE_1.49.0.tgz(r-4.5-any)
MPFE_1.49.0.tar.gz(r-4.7-any)MPFE_1.49.0.tar.gz(r-4.6-any)
MPFE_1.49.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MPFE/json (API)

# Install 'MPFE' in R:

install.packages('MPFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

patternsExample - PatternsExample

On BioConductor:MPFE-1.49.0(bioc 3.24)MPFE-1.48.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

highthroughputsequencingdata dnamethylation methylseq

3.78 score 2 scripts 3 mentions 3 exports 0 dependencies

Last updated from:28a19c8b15. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	137
linux-devel-x86_64	NOTE	125
source / vignettes	OK	148
linux-release-x86_64	NOTE	118
macos-release-arm64	NOTE	71
macos-oldrel-arm64	NOTE	65
windows-devel	NOTE	65
windows-release	NOTE	56
windows-oldrel	NOTE	60
wasm-release	OK	97

Exports:estimatePatterns patternMap plotPatterns

Dependencies:

MPFE

Rendered fromMPFE.Rnwusingutils::Sweave

Last update: 2020-09-16
Started: 2014-08-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
MPFE	MPFE-package MPFE
Estimate distribution of methylation patterns	estimatePatterns
Plot a representation of the patterns and their frequencies	patternMap
patternsExample	patternsExample
Plot methylation pattern distribution	plotPatterns