Package: MPFE 1.43.0

Conrad Burden

MPFE: Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data

Estimate distribution of methylation patterns from a table of counts from a bisulphite sequencing experiment given a non-conversion rate and read error rate.

Authors:Peijie Lin, Sylvain Foret, Conrad Burden

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MPFE.pdf |MPFE.html✨
MPFE/json (API)

# Install 'MPFE' in R:
install.packages('MPFE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On BioConductor:MPFE-1.43.0(bioc 3.21)MPFE-1.42.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

highthroughputsequencingdatadnamethylationmethylseq

3.78 score 1 scripts 159 downloads 3 mentions 3 exports 0 dependencies

Last updated 25 days agofrom:939ad78f81. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 18 2024
R-4.5-winNOTENov 18 2024
R-4.5-linuxNOTENov 18 2024
R-4.4-winNOTENov 18 2024
R-4.4-macNOTENov 18 2024
R-4.3-winNOTENov 18 2024
R-4.3-macNOTENov 18 2024

Exports:estimatePatternspatternMapplotPatterns

Dependencies:

MPFE

Rendered fromMPFE.Rnwusingutils::Sweaveon Nov 18 2024.

Last update: 2020-09-16
Started: 2014-08-22