{ "_id": "6a49490ba788432aeabf4681", "Package": "MPFE", "Type": "Package", "Title": "Estimation of the amplicon methylation pattern distribution from\nbisulphite sequencing data", "Version": "1.49.0", "Date": "2014-11-28", "Author": "Peijie Lin, Sylvain Foret, Conrad Burden", "biocViews": "HighThroughputSequencingData, DNAMethylation, MethylSeq", "Maintainer": "Conrad Burden ", "Description": "Estimate distribution of methylation patterns from a table\nof counts from a bisulphite sequencing experiment given a\nnon-conversion rate and read error rate.", "License": "GPL (>= 3)", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:39:32 UTC", "RemoteUrl": "https://github.com/bioc/MPFE", "RemoteRef": "HEAD", "RemoteSha": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 13:39:55 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "MPFE_1.49.0.tar.gz", "_fileid": "https://r2.ropensci.org/f53ba1269959cf938cb81d58d2a56a94eb2238038b9324cad79837015c22acc2", "_filesize": 201920, "_sha256": "f53ba1269959cf938cb81d58d2a56a94eb2238038b9324cad79837015c22acc2", "_expires": "2026-10-12T17:55:22.000Z", "_created": "2026-07-03T13:39:55.000Z", "_published": "2026-07-04T17:55:23.594Z", "_bioccheck": { "error": 1, "warning": 5, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908", "_status": "success", "_upstream": "https://github.com/bioc/MPFE", "_commit": { "id": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379972 }, "_maintainer": { "name": "Conrad Burden", "email": "conrad.burden@anu.edu.au", "login": "cjb105", "description": "", "uuid": 7877079 }, "_distro": "resolute", "_jobs": [ { "job": 85154065365, "time": 137, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "8068017772" }, { "job": 85154065308, "time": 125, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "8068013299" }, { "job": 85154065184, "time": 118, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "8068011369" }, { "job": 85154065226, "time": 65, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "8067992396" }, { "job": 85154065329, "time": 71, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "8067994221" }, { "job": 85154065038, "time": 148, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8067967185" }, { "job": 85154065236, "time": 97, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8068003256" }, { "job": 85154065334, "time": 65, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "8067991479" }, { "job": 85154065230, "time": 60, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "8067990285" }, { "job": 85154065232, "time": 56, "config": "windows-release", "r": "4.6.1", "check": "NOTE", "artifact": "8067988735" } ], "_registered": true, "_dependencies": [], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23" } ], "_topics": [ "highthroughputsequencingdata", "dnamethylation", "methylseq" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 445, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_mentions": 3, "_searchresults": 2, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MPFE.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "estimatePatterns", "patternMap", "plotPatterns" ], "_datasets": [ { "name": "patternsExample", "title": "patternsExample", "object": "patternsExample", "file": "patternsExample.rda", "class": [ "data.frame" ], "fields": [ "mPattern", "k1", "k2" ], "rows": 21, "table": true, "tojson": true } ], "_help": [ { "page": "MPFE-package", "title": "MPFE", "topics": [ "MPFE-package", "MPFE" ] }, { "page": "estimatePatterns", "title": "Estimate distribution of methylation patterns", "topics": [ "estimatePatterns" ] }, { "page": "patternMap", "title": "Plot a representation of the patterns and their frequencies", "topics": [ "patternMap" ] }, { "page": "patternsExample", "title": "patternsExample", "topics": [ "patternsExample" ] }, { "page": "plotPatterns", "title": "Plot methylation pattern distribution", "topics": [ "plotPatterns" ] } ], "_rundeps": [], "_vignettes": [ { "source": "MPFE.Rnw", "filename": "MPFE.pdf", "title": "MPFE", "engine": "utils::Sweave", "headings": [], "created": "2014-08-22 20:00:17", "modified": "2020-09-16 04:22:19", "commits": 4 } ], "_score": 3.778151250383644, "_indexed": true, "_nocasepkg": "mpfe", "_universes": [ "bioc", "cjb105" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.49.0", "date": "2026-07-03T13:42:05.000Z", "distro": "resolute", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/f9f1cc7fec1e1d2b164cc542586b0cb9008efaa958e851e21efa789a4412b87b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.6.1", "os": "linux", "version": "1.49.0", "date": "2026-07-03T13:41:59.000Z", "distro": "resolute", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/1c2a898fc02b9369ce8646532efb4b55bac984649d53810e8a58472845f5f0b5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.5.3", "os": "mac", "version": "1.49.0", "date": "2026-07-03T13:41:09.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/0508169ebbaae9e9c6ef1401e959e8ea6f81408eb248f4245e9589224f98bafa", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.6.1", "os": "mac", "version": "1.49.0", "date": "2026-07-03T13:41:13.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/8771126bb8e2283877ffc8e9562c72d6387256ccdc3cce4aea2c1cb4bc492105", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.6.0", "os": "wasm", "version": "1.49.0", "date": "2026-07-03T13:41:46.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/7b415a82f78c0ca3e938b6620d1ba6e65c735065b9af93df65cfac6339b2d661", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.7.0", "os": "win", "version": "1.49.0", "date": "2026-07-03T13:40:59.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/bc1d3895cb7d4e6338bc30e29ee64456f50449c6faacc38db5b4729990db1c36", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.5.3", "os": "win", "version": "1.49.0", "date": "2026-07-03T13:40:57.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/c96fc7f44d2854396f55f8c3e5dc31eb55bb26820fd0415fcf81befedbf9e66c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" }, { "r": "4.6.1", "os": "win", "version": "1.49.0", "date": "2026-07-03T13:40:53.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "https://r2.ropensci.org/89ba34728149e8acaaee6fae50d7bb3fcfd08a9c775cc596fc4221341559b2b3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/28664139908" } ] }