{ "_id": "6a1ac1591d7bb097a09d8270", "Package": "MPFE", "Type": "Package", "Title": "Estimation of the amplicon methylation pattern distribution from\nbisulphite sequencing data", "Version": "1.49.0", "Date": "2014-11-28", "Author": "Peijie Lin, Sylvain Foret, Conrad Burden", "biocViews": "HighThroughputSequencingData, DNAMethylation, MethylSeq", "Maintainer": "Conrad Burden ", "Description": "Estimate distribution of methylation patterns from a table\nof counts from a bisulphite sequencing experiment given a\nnon-conversion rate and read error rate.", "License": "GPL (>= 3)", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:39:32 UTC", "RemoteUrl": "https://github.com/bioc/MPFE", "RemoteRef": "HEAD", "RemoteSha": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 07:27:40 UTC", "User": "root" }, "MD5sum": "c48f4b31552d744e728aaeb14e9626bb", "_user": "bioc", "_type": "src", "_file": "MPFE_1.49.0.tar.gz", "_fileid": "b3d23728d2d8b979bb80ea2b8b173e208f0dee060e5e7a0f412521bbbc913371", "_filesize": 200570, "_sha256": "b3d23728d2d8b979bb80ea2b8b173e208f0dee060e5e7a0f412521bbbc913371", "_created": "2026-05-30T07:27:40.000Z", "_published": "2026-05-30T10:52:09.439Z", "_jobs": [ { "job": 78633482421, "time": 134, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306479890" }, { "job": 78633482428, "time": 176, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306484630" }, { "job": 78633482425, "time": 179, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306484935" }, { "job": 78633482431, "time": 106, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307594467" }, { "job": 78633482423, "time": 103, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307591584" }, { "job": 78633319004, "time": 171, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306464125" }, { "job": 78633482419, "time": 78, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306473734" }, { "job": 78633482426, "time": 67, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306472276" }, { "job": 78633482432, "time": 76, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306473322" }, { "job": 78633482439, "time": 56, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306470968" } ], "_bioccheck": { "error": 1, "warning": 5, "note": 13 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/MPFE", "_commit": { "id": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379972 }, "_maintainer": { "name": "Conrad Burden", "email": "conrad.burden@anu.edu.au", "login": "cjb105", "description": "", "uuid": 7877079 }, "_distro": "noble", "_registered": true, "_dependencies": [], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23" } ], "_topics": [ "highthroughputsequencingdata", "dnamethylation", "methylseq" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 289, "source": "https://www.bioconductor.org/packages/stats/bioc/MPFE" }, "_mentions": 3, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MPFE.html", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "estimatePatterns", "patternMap", "plotPatterns" ], "_datasets": [ { "name": "patternsExample", "title": "patternsExample", "object": "patternsExample", "file": "patternsExample.rda", "class": [ "data.frame" ], "fields": [ "mPattern", "k1", "k2" ], "rows": 21, "table": true, "tojson": true } ], "_help": [ { "page": "MPFE-package", "title": "MPFE", "topics": [ "MPFE-package", "MPFE" ] }, { "page": "estimatePatterns", "title": "Estimate distribution of methylation patterns", "topics": [ "estimatePatterns" ] }, { "page": "patternMap", "title": "Plot a representation of the patterns and their frequencies", "topics": [ "patternMap" ] }, { "page": "patternsExample", "title": "patternsExample", "topics": [ "patternsExample" ] }, { "page": "plotPatterns", "title": "Plot methylation pattern distribution", "topics": [ "plotPatterns" ] } ], "_rundeps": [], "_vignettes": [ { "source": "MPFE.Rnw", "filename": "MPFE.pdf", "title": "MPFE", "engine": "utils::Sweave", "headings": [], "created": "2014-08-22 20:00:17", "modified": "2020-09-16 04:22:19", "commits": 4 } ], "_score": 3.778151250383644, "_indexed": true, "_nocasepkg": "mpfe", "_universes": [ "bioc", "cjb105" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.49.0", "date": "2026-05-30T07:30:39.000Z", "distro": "noble", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "57a64b91ca72b39beb911d9e58aa92a13625572bcda7b17de50fad53e7830941", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.6.0", "os": "linux", "version": "1.49.0", "date": "2026-05-30T07:30:42.000Z", "distro": "noble", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "d495e62449f6738c66195317e00b397beb6748223e3e786c2e114180ec1ebddc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.5.3", "os": "mac", "version": "1.49.0", "date": "2026-05-30T10:42:26.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "520544adba83a32d49949ea7fd21f9b61560cf02ca958acae9c3fd0933d7ab4d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.6.0", "os": "mac", "version": "1.49.0", "date": "2026-05-30T10:41:57.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "7f3b2a599d30da340d0fc515e63a2bd729cb4ef5dcea37231115052a373870df", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.6.0", "os": "wasm", "version": "1.49.0", "date": "2026-05-30T07:29:12.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "66ebabef3a1336026de12da867c515fe60458f4de3a13f2a791f797f07c162d2", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.7.0", "os": "win", "version": "1.49.0", "date": "2026-05-30T07:28:45.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "ccbae7af90d6ea9451f8e9ece36b37c022a11903013e977c75978607186ff602", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.5.3", "os": "win", "version": "1.49.0", "date": "2026-05-30T07:28:54.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "7ea25c8655fdffaf137a3c1d0a306e7e140fdc168966619fbb3c7a233c4b1e5b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" }, { "r": "4.6.0", "os": "win", "version": "1.49.0", "date": "2026-05-30T07:28:36.000Z", "commit": "28a19c8b15e3a6fac74ce83014ca15a6fd412739", "fileid": "3c02fc6bd6a213f42cc1abac52a4e0845024e607e8e68e45678c165d153c6b80", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678001893" } ] }