Package: MMDiffBamSubset 1.49.1
Gabriele Schweikert
MMDiffBamSubset: Example ChIP-Seq data for the MMDiff package
Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS
Authors:
MMDiffBamSubset_1.49.1.tar.gz
MMDiffBamSubset_1.49.1.tar.gz(r-4.7-any)MMDiffBamSubset_1.49.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MMDiffBamSubset/json (API)
| # Install 'MMDiffBamSubset' in R: |
| install.packages('MMDiffBamSubset', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MMDiffBamSubset-1.49.1(data/experiment 3.24)MMDiffBamSubset-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatagenomestemcellmus_musculus_datadnaseqdatachipseqdataarrayexpressdatapkg
Last updated from:87648aeb03. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 141 | ||
| linux-devel | NOTE | 291 | ||
| source / vignettes | OK | 502 | ||
| linux-release | NOTE | 359 |
Exports:Cfp1.ExpInputNull.AB2Null.AB2.PeaksResc.AB2Resc.AB2.PeaksWT.AB2WT.AB2.Peaks
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Utilities returning the paths to the sample sheet Cfp1.csv, to the BAM files WT_2.bam, Null_2.bam, Resc_2.bam and Input.bam, as well as corresponding peak files WT_2_Macs_peaks.xls, Null_2_Macs_peaks.xls Resc_2_Macs_peaks.xls | MMDiffBamSubset-package Cfp1.Exp Input MMDiffBamSubset Null.AB2 Null.AB2.Peaks Resc.AB2 Resc.AB2.Peaks WT.AB2 WT.AB2.Peaks |