Package: MMDiff2 1.33.0

Gabriele Schweikert

MMDiff2: Statistical Testing for ChIP-Seq data sets

This package detects statistically significant differences between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).

Authors:Gabriele Schweikert [cre, aut], David Kuo [aut]

MMDiff2_1.33.0.tar.gz
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MMDiff2.pdf |MMDiff2.html✨
MMDiff2/json (API)

Peer review:

On BioConductor:MMDiff2-1.33.0(bioc 3.20)MMDiff2-1.32.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

24 exports 0.71 score 96 dependencies

Last updated 2 months agofrom:dff78f45d5

Exports:compDistscompHistscompPvalsContrastCountsDBAmmdDistsestimateFragmentCentersGenomegetPeakReadsHistsmetaDatanumPeaksnumSamplesplotDistsplotDISTS4PeakplotPeakReadsRegionsreportResultsrunShinyMMDiff2SamplessetContrastsetRegions

Dependencies:abindaskpassbase64encBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitopsBSgenomebslibcachemclicodetoolscolorspacecommonmarkcpp11crayoncurlDelayedArraydigestfansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggplot2gluegtablehtmltoolshttpuvhttrIRangesisobandjquerylibjsonlitelabelinglambda.rlaterlatticelifecyclelocfitmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpromisesR6rappdirsRColorBrewerRcppRCurlrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorssassscalesshinysnowsourcetoolsSparseArraySummarizedExperimentsystibbleUCSC.utilsutf8vctrsviridisLitewithrXMLxtableXVectoryamlzlibbioc