Package: MLP 1.61.0

Tobias Verbeke

MLP: Mean Log P Analysis

Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.

Authors:Nandini Raghavan [aut], Tobias Verbeke [aut], An De Bondt [aut], Javier Cabrera [ctb], Dhammika Amaratunga [ctb], Tine Casneuf [ctb], Willem Ligtenberg [ctb], Laure Cougnaud [cre], Katarzyna Gorczak [ctb]

MLP_1.61.0.tar.gz
MLP_1.61.0.zip(r-4.7)MLP_1.61.0.zip(r-4.6)MLP_1.61.0.zip(r-4.5)
MLP_1.61.0.tgz(r-4.6-any)MLP_1.61.0.tgz(r-4.5-any)
MLP_1.61.0.tar.gz(r-4.7-any)MLP_1.61.0.tar.gz(r-4.6-any)
MLP_1.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MLP/json (API)
NEWS

# Install 'MLP' in R:
install.packages('MLP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MLP-1.61.0(bioc 3.24)MLP-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneexpressionpathwaysreactomekegggo

4.78 score 1 packages 8 scripts 510 downloads 37 mentions 6 exports 40 dependencies

Last updated from:14fdc6f434. Checks:3 ERROR, 7 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR279
linux-devel-x86_64OK784
source / vignettesOK381
linux-release-x86_64OK833
macos-release-arm64ERROR544
macos-oldrel-arm64ERROR551
windows-develOK827
windows-releaseOK706
windows-oldrelOK771
wasm-releaseOK250

Exports:addGeneSetDescriptiongetGeneSetsMLPmlpBarplotplotGeneSetSignificanceplotGOgraph

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemcaToolsclicpp11crayoncurlDBIfastmapgenericsgluegplotsgtoolshttrIRangesjsonliteKEGGRESTKernSmoothlifecyclememoisemimeopensslpkgconfigpngR6rlangRSQLiteS4VectorsSeqinfosysvctrsXVector

UsingMLP

Rendered fromUsingMLP.Rnwusingutils::Sweaveon May 30 2026.

Last update: 2021-11-19
Started: 2013-11-01