Package: MLP 1.55.0

Tobias Verbeke

MLP: Mean Log P Analysis

Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.

Authors:Nandini Raghavan [aut], Tobias Verbeke [aut], An De Bondt [aut], Javier Cabrera [ctb], Dhammika Amaratunga [ctb], Tine Casneuf [ctb], Willem Ligtenberg [ctb], Laure Cougnaud [cre], Katarzyna Gorczak [ctb]

MLP_1.55.0.tar.gz
MLP_1.55.0.zip(r-4.5)MLP_1.55.0.zip(r-4.4)MLP_1.55.0.zip(r-4.3)
MLP_1.55.0.tgz(r-4.5-any)MLP_1.55.0.tgz(r-4.4-any)MLP_1.55.0.tgz(r-4.3-any)
MLP_1.55.0.tar.gz(r-4.5-noble)MLP_1.55.0.tar.gz(r-4.4-noble)
MLP_1.55.0.tgz(r-4.4-emscripten)MLP_1.55.0.tgz(r-4.3-emscripten)
MLP.pdf |MLP.html✨
MLP/json (API)
NEWS

# Install 'MLP' in R:
install.packages('MLP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:MLP-1.55.0(bioc 3.21)MLP-1.54.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneticsgeneexpressionpathwaysreactomekegggo

4.78 score 1 packages 4 scripts 378 downloads 37 mentions 6 exports 43 dependencies

Last updated 5 months agofrom:679711e35e. Checks:2 OK, 4 NOTE, 3 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 25 2025
R-4.5-winNOTEMar 25 2025
R-4.5-macERRORMar 25 2025
R-4.5-linuxNOTEMar 25 2025
R-4.4-winNOTEMar 25 2025
R-4.4-macERRORMar 25 2025
R-4.4-linuxNOTEMar 25 2025
R-4.3-winOKMar 25 2025
R-4.3-macERRORMar 25 2025

Exports:addGeneSetDescriptiongetGeneSetsMLPmlpBarplotplotGeneSetSignificanceplotGOgraph

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemcaToolsclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegplotsgtoolshttrIRangesjsonliteKEGGRESTKernSmoothlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVector

UsingMLP

Rendered fromUsingMLP.Rnwusingutils::Sweaveon Mar 25 2025.

Last update: 2021-11-19
Started: 2013-11-01