Package: MLP 1.55.0
Tobias Verbeke
MLP: Mean Log P Analysis
Pathway analysis based on p-values associated to genes from a genes expression analysis of interest. Utility functions enable to extract pathways from the Gene Ontology Biological Process (GOBP), Molecular Function (GOMF) and Cellular Component (GOCC), Kyoto Encyclopedia of Genes of Genomes (KEGG) and Reactome databases. Methodology, and helper functions to display the results as a table, barplot of pathway significance, Gene Ontology graph and pathway significance are available.
Authors:
MLP_1.55.0.tar.gz
MLP_1.55.0.zip(r-4.5)MLP_1.55.0.zip(r-4.4)MLP_1.55.0.zip(r-4.3)
MLP_1.55.0.tgz(r-4.4-any)MLP_1.55.0.tgz(r-4.3-any)
MLP_1.55.0.tar.gz(r-4.5-noble)MLP_1.55.0.tar.gz(r-4.4-noble)
MLP_1.55.0.tgz(r-4.4-emscripten)MLP_1.55.0.tgz(r-4.3-emscripten)
MLP.pdf |MLP.html✨
MLP/json (API)
NEWS
| # Install 'MLP' in R: |
| install.packages('MLP', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MLP-1.53.0(bioc 3.20)MLP-1.52.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
geneticsgeneexpressionpathwaysreactomekegggo
Last updated 23 days agofrom:679711e35e. Checks:OK: 2 NOTE: 3 ERROR: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | NOTE | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 30 2024 |
| R-4.4-win | NOTE | Oct 31 2024 |
| R-4.4-mac | ERROR | Oct 31 2024 |
| R-4.3-win | OK | Oct 31 2024 |
| R-4.3-mac | ERROR | Oct 31 2024 |
Exports:addGeneSetDescriptiongetGeneSetsMLPmlpBarplotplotGeneSetSignificanceplotGOgraph
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemcaToolsclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluegplotsgtoolshttrIRangesjsonliteKEGGRESTKernSmoothlifecyclememoisemimeopensslpkgconfigplogrpngR6rlangRSQLiteS4VectorssysUCSC.utilsvctrsXVectorzlibbioc
