Package: MACSQuantifyR 1.19.0
Raphaël Bonnet
MACSQuantifyR: Fast treatment of MACSQuantify FACS data
Automatically process the metadata of MACSQuantify FACS sorter. It runs multiple modules: i) imports of raw file and graphical selection of duplicates in well plate, ii) computes statistics on data and iii) can compute combination index.
Authors:
MACSQuantifyR_1.19.0.tar.gz
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MACSQuantifyR.pdf |MACSQuantifyR.html✨
MACSQuantifyR/json (API)
NEWS
| # Install 'MACSQuantifyR' in R: |
| install.packages('MACSQuantifyR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:MACSQuantifyR-1.19.0(bioc 3.20)MACSQuantifyR-1.18.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:7e9c7392fc
Exports:barplot_datacombination_indexgenerate_reportload_MACSQuantnew_class_MQon_plate_selectionpipelinerDatasetPathsorted
Dependencies:askpassbase64encbslibcachemcellrangerclicolorspacecpp11crayoncurldeldirdigestevaluatefansifarverfastmapfontawesomefsggplot2ggrepelgluegridExtragtablehighrhmshtmltoolshttrinterpisobandjpegjquerylibjsonliteknitrlabelinglatticelatticeExtralifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigpngprettydocprettyunitsprogressR6rappdirsRColorBrewerRcppRcppEigenreadxlrematchrlangrmarkdownrvestsassscalesselectrstringistringrsystibbletinytexutf8vctrsviridisLitewithrxfunxml2yaml
MACSQuantifyR - Introduction
Rendered fromMACSQuantifyR.Rmdusingknitr::rmarkdownon Jun 11 2024.Last update: 2019-10-08
Started: 2018-11-17
MACSQuantifyR - Automatic pipeline
Rendered fromMACSQuantifyR_pipeline.Rmdusingknitr::rmarkdownon Jun 11 2024.Last update: 2019-10-08
Started: 2019-10-08
MACSQuantifyR - Step-by-step analysis
Rendered fromMACSQuantifyR_combo.Rmdusingknitr::rmarkdownon Jun 11 2024.Last update: 2019-10-22
Started: 2019-10-08
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Generate barplots | barplot_data |
| compute combination index | combination_index |
| Word report generation | generate_report |
| Load xls file from maxQuant 96-well-plate device | load_MACSQuant |
| The MACSQuant Class | MACSQuant MACSQuant-class |
| Create a new MACSQuant object | new_class_MQ |
| Sort experimental design on graphical 96-well-plate | on_plate_selection |
| pipeline with report generation | pipeline |
| accessor function to access raw data | rData |
| sets custom output path | setPath |
| accessor function to access sorted data | sorted |