Package: LungCancerLines 0.51.0

Michael Lawrence

LungCancerLines: Reads from Two Lung Cancer Cell Lines

Reads from an RNA-seq experiment between two lung cancer cell lines: H1993 (met) and H2073 (primary). The reads are stored as Fastq files and are meant for use with the TP53Genome object in the gmapR package.

Authors:Cory Barr, Michael Lawrence

LungCancerLines_0.51.0.tar.gz
LungCancerLines_0.51.0.tar.gz(r-4.7-any)LungCancerLines_0.51.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
LungCancerLines/json (API)

# Install 'LungCancerLines' in R:

install.packages('LungCancerLines', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:LungCancerLines-0.51.0(data/experiment 3.24)LungCancerLines-0.50.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata genome cancerdata lungcancerdata rnaseqdata datapkg

2.88 score 19 scripts 2 exports 21 dependencies

Last updated from:e26f7cb5d4. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	141
linux-devel	NOTE	239
source / vignettes	OK	194
linux-release	NOTE	257

Exports:LungCancerBamFiles LungCancerFastqFiles

Dependencies:BH BiocGenerics BiocParallel Biostrings bitops codetools cpp11 crayon formatR futile.logger futile.options generics GenomicRanges IRanges lambda.r Rhtslib Rsamtools S4Vectors Seqinfo snow XVector

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Genomic Sequence of the TP53 Gene Plus a 1-Megabase Region on Each Side of the Gene	TP53Genome-package TP53Genome
Get the BAM paths	LungCancerBamFiles
Get the Fastq paths	LungCancerFastqFiles