Package: LiquidAssociation 1.61.0

Yen-Yi Ho

LiquidAssociation: LiquidAssociation

The package contains functions for calculate direct and model-based estimators for liquid association. It also provides functions for testing the existence of liquid association given a gene triplet data.

Authors:Yen-Yi Ho <[email protected]>

LiquidAssociation_1.61.0.tar.gz
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LiquidAssociation.pdf |LiquidAssociation.html✨
LiquidAssociation/json (API)

# Install 'LiquidAssociation' in R:

install.packages('LiquidAssociation', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:LiquidAssociation-1.59.0(bioc 3.20)LiquidAssociation-1.58.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

pathways geneexpression cellbiology genetics network timecourse

3.78 score 1 packages 3 scripts 265 downloads 14 exports 57 dependencies

Last updated 23 days agofrom:55fef4770d. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 30 2024
R-4.5-win	NOTE	Oct 31 2024
R-4.5-linux	NOTE	Oct 30 2024
R-4.4-win	NOTE	Oct 31 2024
R-4.4-mac	NOTE	Oct 31 2024
R-4.3-win	NOTE	Oct 31 2024
R-4.3-mac	NOTE	Oct 31 2024

Exports:boots.gla.se2 boots.se CNM.full CNM.simple form getsGLA getsLA GLA LA permute3.se plotGLA print qqnorm2 stand

Dependencies:AnnotationDbi askpass backports Biobase BiocGenerics Biostrings bit bit64 blob broom cachem cli cpp11 crayon curl DBI dplyr fansi fastmap geepack generics GenomeInfoDb GenomeInfoDbData glue httr IRanges jsonlite KEGGREST lifecycle magrittr MASS memoise mime openssl org.Sc.sgd.db pillar pkgconfig plogr png purrr R6 rlang RSQLite S4Vectors stringi stringr sys tibble tidyr tidyselect UCSC.utils utf8 vctrs withr XVector yeastCC zlibbioc

LiquidAssociation Vignette

Rendered fromLiquidAssociation.Rnwusingutils::Sweaveon Oct 30 2024.

Last update: 2013-11-01
Started: 2013-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Liquid Associaiton Package	LiquidAssociation-package LiquidAssociation
Class CNM	CNM-class print,CNM-method show,CNM-method
The function fits a full conditional normal model (CNM)	CNM.full CNM.full,eSet-method CNM.full,matrix-method CNM.full-methods
The function fits a reduced conditional normal model (CNM)	CNM.simple CNM.simple,eSet-method CNM.simple,matrix-method CNM.simple-methods
Function to calculate the sGLA test statistic for a given triplet data	getsGLA getsGLA,eSet-method getsGLA,matrix-method getsGLA-methods
Function to calculate the sLA test statistic for a given triplet data	getsLA getsLA,eSet-method getsLA,matrix-method getsLA-methods
Function to calculate GLA estimate	GLA GLA,eSet-method GLA,matrix-method GLA-methods
Function to calculate LA estimate	LA LA,eSet-method LA,matrix-method LA-methods
The function plots scatter plots of two variables conditioning on the value of a third variable.	plotGLA plotGLA,eSet-method plotGLA,matrix-method plotGLA-methods