Package: LiquidAssociation 1.59.0

Yen-Yi Ho

LiquidAssociation: LiquidAssociation

The package contains functions for calculate direct and model-based estimators for liquid association. It also provides functions for testing the existence of liquid association given a gene triplet data.

Authors:Yen-Yi Ho <[email protected]>

LiquidAssociation_1.59.0.tar.gz
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LiquidAssociation.pdf |LiquidAssociation.html
LiquidAssociation/json (API)

# Install 'LiquidAssociation' in R:
install.packages('LiquidAssociation', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On BioConductor:LiquidAssociation-1.59.0(bioc 3.20)LiquidAssociation-1.58.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

14 exports 1.16 score 57 dependencies 1 dependents

Last updated 2 months agofrom:3e07664a70

Exports:boots.gla.se2boots.seCNM.fullCNM.simpleformgetsGLAgetsLAGLALApermute3.seplotGLAprintqqnorm2stand

Dependencies:AnnotationDbiaskpassbackportsBiobaseBiocGenericsBiostringsbitbit64blobbroomcachemclicpp11crayoncurlDBIdplyrfansifastmapgeepackgenericsGenomeInfoDbGenomeInfoDbDatagluehttrIRangesjsonliteKEGGRESTlifecyclemagrittrMASSmemoisemimeopensslorg.Sc.sgd.dbpillarpkgconfigplogrpngpurrrR6rlangRSQLiteS4VectorsstringistringrsystibbletidyrtidyselectUCSC.utilsutf8vctrswithrXVectoryeastCCzlibbioc

LiquidAssociation Vignette

Rendered fromLiquidAssociation.Rnwusingutils::Sweaveon Jun 17 2024.

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Liquid Associaiton PackageLiquidAssociation-package LiquidAssociation
Class CNMCNM-class print,CNM-method show,CNM-method
The function fits a full conditional normal model (CNM)CNM.full CNM.full,eSet-method CNM.full,matrix-method CNM.full-methods
The function fits a reduced conditional normal model (CNM)CNM.simple CNM.simple,eSet-method CNM.simple,matrix-method CNM.simple-methods
Function to calculate the sGLA test statistic for a given triplet datagetsGLA getsGLA,eSet-method getsGLA,matrix-method getsGLA-methods
Function to calculate the sLA test statistic for a given triplet datagetsLA getsLA,eSet-method getsLA,matrix-method getsLA-methods
Function to calculate GLA estimateGLA GLA,eSet-method GLA,matrix-method GLA-methods
Function to calculate LA estimateLA LA,eSet-method LA,matrix-method LA-methods
The function plots scatter plots of two variables conditioning on the value of a third variable.plotGLA plotGLA,eSet-method plotGLA,matrix-method plotGLA-methods