{
  "_id": "6ae750072e87f76f20acce9c",
  "Package": "LiquidAssociation",
  "Type": "Package",
  "Title": "LiquidAssociation",
  "Version": "1.67.0",
  "Date": "2009-10-07",
  "Author": "Yen-Yi Ho <yho@jhsph.edu>",
  "Maintainer": "Yen-Yi Ho <yho@jhsph.edu>",
  "Description": "The package contains functions for calculate direct and\nmodel-based estimators for liquid association. It also provides\nfunctions for testing the existence of liquid association given\na gene triplet data.",
  "License": "GPL (>=3)",
  "LazyLoad": "yes",
  "biocViews": "Pathways, GeneExpression, CellBiology, Genetics, Network,\nTimeCourse",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:34:19 UTC",
  "RemoteUrl": "https://github.com/bioc/LiquidAssociation",
  "RemoteRef": "HEAD",
  "RemoteSha": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-11-01 13:17:48 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "LiquidAssociation_1.67.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/56d5ad0f468fafb33e188899c7483ada468e380e8ec4967abb385945a749414a",
  "_filesize": 290039,
  "_sha256": "56d5ad0f468fafb33e188899c7483ada468e380e8ec4967abb385945a749414a",
  "_expires": "2027-02-09T14:43:18.000Z",
  "_created": "2026-11-01T13:17:48.000Z",
  "_published": "2026-11-01T14:43:19.840Z",
  "_upstream": "https://github.com/bioc/LiquidAssociation",
  "_status": "success",
  "_maintainer": {
    "name": "Yen-Yi Ho",
    "email": "yho@jhsph.edu"
  },
  "_jobs": [
    {
      "job": 124859988221,
      "time": 149,
      "config": "bioc-checks",
      "r": "4.6.2",
      "check": "ERROR",
      "artifact": "13086211891"
    },
    {
      "job": 124859988260,
      "time": 252,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "13086162369"
    },
    {
      "job": 124859988307,
      "time": 282,
      "config": "linux-release-x86_64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13085823014"
    },
    {
      "job": 124859988225,
      "time": 119,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "13088161049"
    },
    {
      "job": 124859988245,
      "time": 152,
      "config": "macos-release-arm64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13088041642"
    },
    {
      "job": 124857435877,
      "time": 226,
      "config": "source",
      "r": "4.6.2",
      "check": "OK",
      "artifact": "13084898540"
    },
    {
      "job": 124859988314,
      "time": 102,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "13085686787"
    },
    {
      "job": 124859988257,
      "time": 439,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "13084504846"
    },
    {
      "job": 124859988295,
      "time": 299,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "13084499743"
    },
    {
      "job": 124859988258,
      "time": 389,
      "config": "windows-release-x86_64",
      "r": "4.6.2",
      "check": "NOTE",
      "artifact": "13085745380"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 2,
    "note": 13
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963",
  "_commit": {
    "id": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379659
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "geepack",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "yeastCC",
      "role": "Depends"
    },
    {
      "package": "org.Sc.sgd.db",
      "role": "Depends"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    },
    {
      "package": "graphics",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.67.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.66.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "pathways",
    "geneexpression",
    "cellbiology",
    "genetics",
    "network",
    "timecourse"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 482,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 597,
    "source": "https://www.bioconductor.org/packages/stats/bioc/LiquidAssociation"
  },
  "_searchresults": 6,
  "_abi": {
    "exports": [
      {
        "key": "LiquidAssociation::CNM",
        "hash": "0a111025db5ecca3"
      },
      {
        "key": "LiquidAssociation::generic:CNM.full",
        "hash": "b45de99e1eaf48d7"
      },
      {
        "key": "LiquidAssociation::generic:CNM.simple",
        "hash": "f4b9c2b1fdc174fe"
      },
      {
        "key": "LiquidAssociation::generic:GLA",
        "hash": "f110dc2acbde9370"
      },
      {
        "key": "LiquidAssociation::generic:LA",
        "hash": "f6f7d992b7078e72"
      },
      {
        "key": "LiquidAssociation::generic:getsGLA",
        "hash": "2668240932dbc622"
      },
      {
        "key": "LiquidAssociation::generic:getsLA",
        "hash": "7d8e83d93d0746c5"
      },
      {
        "key": "LiquidAssociation::generic:plotGLA",
        "hash": "e3080dcd5e48eec2"
      }
    ],
    "imports": []
  },
  "_rbuild": "4.6.2",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/LiquidAssociation.html",
    "extra/manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "boots.gla.se2",
    "boots.se",
    "CNM.full",
    "CNM.simple",
    "form",
    "getsGLA",
    "getsLA",
    "GLA",
    "LA",
    "permute3.se",
    "plotGLA",
    "print",
    "qqnorm2",
    "stand"
  ],
  "_help": [
    {
      "page": "LiquidAssociation-package",
      "title": "Liquid Associaiton Package",
      "topics": [
        "LiquidAssociation-package",
        "LiquidAssociation"
      ]
    },
    {
      "page": "CNM-class",
      "title": "Class CNM",
      "topics": [
        "CNM-class",
        "print,CNM-method",
        "show,CNM-method"
      ]
    },
    {
      "page": "CNM.full-methods",
      "title": "The function fits a full conditional normal model (CNM)",
      "topics": [
        "CNM.full",
        "CNM.full,eSet-method",
        "CNM.full,matrix-method",
        "CNM.full-methods"
      ]
    },
    {
      "page": "CNM.simple-methods",
      "title": "The function fits a reduced conditional normal model (CNM)",
      "topics": [
        "CNM.simple",
        "CNM.simple,eSet-method",
        "CNM.simple,matrix-method",
        "CNM.simple-methods"
      ]
    },
    {
      "page": "getsGLA-methods",
      "title": "Function to calculate the sGLA test statistic for a given triplet data",
      "topics": [
        "getsGLA",
        "getsGLA,eSet-method",
        "getsGLA,matrix-method",
        "getsGLA-methods"
      ]
    },
    {
      "page": "getsLA-methods",
      "title": "Function to calculate the sLA test statistic for a given triplet data",
      "topics": [
        "getsLA",
        "getsLA,eSet-method",
        "getsLA,matrix-method",
        "getsLA-methods"
      ]
    },
    {
      "page": "GLA-methods",
      "title": "Function to calculate GLA estimate",
      "topics": [
        "GLA",
        "GLA,eSet-method",
        "GLA,matrix-method",
        "GLA-methods"
      ]
    },
    {
      "page": "LA-methods",
      "title": "Function to calculate LA estimate",
      "topics": [
        "LA",
        "LA,eSet-method",
        "LA,matrix-method",
        "LA-methods"
      ]
    },
    {
      "page": "plotGLA-methods",
      "title": "The function plots scatter plots of two variables conditioning on the value of a third variable.",
      "topics": [
        "plotGLA",
        "plotGLA,eSet-method",
        "plotGLA,matrix-method",
        "plotGLA-methods"
      ]
    }
  ],
  "_rundeps": [
    "AnnotationDbi",
    "askpass",
    "backports",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "broom",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dplyr",
    "fastmap",
    "geepack",
    "generics",
    "glue",
    "httr",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lifecycle",
    "magrittr",
    "MASS",
    "memoise",
    "mime",
    "openssl",
    "org.Sc.sgd.db",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rlang",
    "RSQLite",
    "S4Vectors",
    "Seqinfo",
    "stringi",
    "stringr",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yeastCC"
  ],
  "_vignettes": [
    {
      "source": "LiquidAssociation.Rnw",
      "filename": "LiquidAssociation.pdf",
      "title": "LiquidAssociation Vignette",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2013-11-01 20:10:49",
      "modified": "2013-11-01 20:10:49",
      "commits": 1
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": true,
  "_nocasepkg": "liquidassociation",
  "_universes": [
    "bioc"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.67.0",
      "date": "2026-11-01T13:44:16.000Z",
      "distro": "resolute",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/cef64d413a7af1c8244810915e382333dfc80edfa127bd2b2ce8c430fd616d16",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.6.2",
      "os": "linux",
      "version": "1.67.0",
      "date": "2026-11-01T13:44:42.000Z",
      "distro": "resolute",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/07f1d6580c5910a7c5c198a80e0b467302e4aae914acc6de823581c1b5e726bf",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.67.0",
      "date": "2026-11-01T14:41:35.000Z",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/f222a5b9bd3704481b379624e011d03c0ec6f1974e186da3e77e3211647e2478",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.6.2",
      "os": "mac",
      "version": "1.67.0",
      "date": "2026-11-01T14:41:57.000Z",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/5ac68e3f130cf9c65bb04513591b757bb281fb0fe6492c67b5b8da76faa5beb7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.67.0",
      "date": "2026-11-01T13:42:40.000Z",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/9798502fc6b09df6bfab73073f49435615f113201fb5aa27a87b58fb2509fa26",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.67.0",
      "date": "2026-11-01T13:26:35.000Z",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/4fe7c08f630be8411ef31020c54fef47eb45d5ed5cc79bf8276e6f0bc17c694a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.67.0",
      "date": "2026-11-01T13:24:47.000Z",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/4a285b7c805cfa1600904401742beba6dca1ad3cab3c111533bc98d30c338ddc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    },
    {
      "r": "4.6.2",
      "os": "win",
      "version": "1.67.0",
      "date": "2026-11-01T13:26:01.000Z",
      "commit": "a921d9241341ec3b579dcc1dcdb7ce7dfa158d10",
      "fileid": "https://r2.ropensci.org/8e2634c07d72bfdc57e32535142f4ee907ec9fb28055f221af80b187eb71fd43",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309077963"
    }
  ]
}