{
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  "Title": "LiquidAssociation",
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  "Author": "Yen-Yi Ho <yho@jhsph.edu>",
  "Maintainer": "Yen-Yi Ho <yho@jhsph.edu>",
  "Description": "The package contains functions for calculate direct and\nmodel-based estimators for liquid association. It also provides\nfunctions for testing the existence of liquid association given\na gene triplet data.",
  "License": "GPL (>=3)",
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  "biocViews": "Pathways, GeneExpression, CellBiology, Genetics, Network,\nTimeCourse",
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      "title": "Liquid Associaiton Package",
      "topics": [
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        "LiquidAssociation"
      ]
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      "title": "Class CNM",
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        "print,CNM-method",
        "show,CNM-method"
      ]
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      "title": "The function fits a full conditional normal model (CNM)",
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        "CNM.simple,matrix-method",
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        "GLA,eSet-method",
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        "LA,eSet-method",
        "LA,matrix-method",
        "LA-methods"
      ]
    },
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      "created": "2013-11-01 20:10:49",
      "modified": "2013-11-01 20:10:49",
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