Package: LRcellTypeMarkers 1.21.0

Wenjing Ma

LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package

This is an external ExperimentData package for LRcell. This data package contains the gene enrichment scores calculated from scRNA-seq dataset which indicates the gene enrichment of each cell type in certain brain region. LRcell package is used to identify specific sub-cell types that drives the changes observed in a bulk RNA-seq differential gene expression experiment. For more details, please visit: https://github.com/marvinquiet/LRcell.

Authors:Wenjing Ma [cre, aut]

LRcellTypeMarkers_1.21.0.tar.gz
LRcellTypeMarkers_1.21.0.tar.gz(r-4.7-any)LRcellTypeMarkers_1.21.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
LRcellTypeMarkers/json (API)

# Install 'LRcellTypeMarkers' in R:

install.packages('LRcellTypeMarkers', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/marvinquiet/lrcelltypemarkers/issues

On BioConductor:LRcellTypeMarkers-1.21.0(data/experiment 3.24)LRcellTypeMarkers-1.20.0(data/experiment 3.23)

experimentdata experimenthub rnaseqdata singlecelldata expressiondata packagetypedata datapkg

3.30 score 1 scripts 0 exports 57 dependencies

Last updated from:ff973a77d5. Checks:1 WARNING, 2 NOTE, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	147
linux-devel	NOTE	189
source / vignettes	OK	185
linux-release	NOTE	270

Exports:

Dependencies:AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr dplyr ExperimentHub fastmap filelock generics glue httr httr2 IRanges jsonlite KEGGREST lifecycle magrittr memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rlang RSQLite S4Vectors Seqinfo stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

LRcellTypeMarkers: Marker gene information for LRcell R Bioconductor package using Bioconductor's ExperimentHub

Download cell-type specific marker gene information | Usage of cell-type specific markers | sessionInfo()

Rendered fromLRcellTypeMarkers-vignette.Rmdusingknitr::rmarkdown

Last update: 2021-08-06
Started: 2020-12-10

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Readme and manuals

Help Manual

Help page	Topics
Marker gene information for LRcell.	LRcellTypeMarkers-package LRcellTypeMarkers