Package: KEGGlincs 1.39.0

Shana White

KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data

See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

Authors:Shana White

KEGGlincs_1.39.0.tar.gz
KEGGlincs_1.39.0.zip(r-4.7)KEGGlincs_1.39.0.zip(r-4.6)KEGGlincs_1.39.0.zip(r-4.5)
KEGGlincs_1.39.0.tgz(r-4.6-any)KEGGlincs_1.39.0.tgz(r-4.5-any)
KEGGlincs_1.39.0.tar.gz(r-4.7-any)KEGGlincs_1.39.0.tar.gz(r-4.6-any)
KEGGlincs_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
KEGGlincs/json (API)
NEWS

# Install 'KEGGlincs' in R:
install.packages('KEGGlincs', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:KEGGlincs-1.39.0(bioc 3.24)KEGGlincs-1.38.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

networkinferencegeneexpressiondatarepresentationthirdpartyclientcellbiologygraphandnetworkpathwayskeggnetwork

4.00 score 3 scripts 426 downloads 18 exports 52 dependencies

Last updated from:321000adca. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR565
linux-devel-x86_64NOTE336
source / vignettesOK293
linux-release-x86_64NOTE349
macos-release-arm64NOTE223
macos-oldrel-arm64NOTE215
windows-develNOTE493
windows-releaseNOTE237
windows-oldrelNOTE561
wasm-releaseOK171

Exports:add_edge_datacyto_visedge_mapping_infoexpand_KEGG_edgesexpand_KEGG_mappingsgenerate_mappingsget_fisher_infoget_graph_objectget_KGMLKEGG_lincskeggerize_edgesKL_comparenode_mapping_infooverlap_infopath_genes_by_cell_typerefine_mappingstidy_edgetoCytoscape

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIfastmapgenericsgluegraphgtoolshgu133a.dbhttrigraphIRangesjsonliteKEGGgraphKEGGRESTKOdatalatticelifecyclemagrittrMatrixmemoisemimeopensslorg.Hs.eg.dbpkgconfigplyrpngR6RcppRCurlRgraphvizRJSONIOrlangRSQLiteS4VectorsSeqinfosysvctrsXMLXVector

KEGGlincs Workflows

Shana White

Rendered fromExample-workflow.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2017-06-15
Started: 2016-10-12