Package: KEGGlincs 1.39.0
Shana White
KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data
See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.
Authors:
KEGGlincs_1.39.0.tar.gz
KEGGlincs_1.39.0.zip(r-4.7)KEGGlincs_1.39.0.zip(r-4.6)KEGGlincs_1.39.0.zip(r-4.5)
KEGGlincs_1.39.0.tgz(r-4.6-any)KEGGlincs_1.39.0.tgz(r-4.5-any)
KEGGlincs_1.39.0.tar.gz(r-4.7-any)KEGGlincs_1.39.0.tar.gz(r-4.6-any)
KEGGlincs_1.39.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
KEGGlincs/json (API)
| # Install 'KEGGlincs' in R: |
| install.packages('KEGGlincs', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:KEGGlincs-1.39.0(bioc 3.24)KEGGlincs-1.38.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
networkinferencegeneexpressiondatarepresentationthirdpartyclientcellbiologygraphandnetworkpathwayskeggnetwork
Last updated from:321000adca. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 221 | ||
| linux-devel-x86_64 | NOTE | 375 | ||
| source / vignettes | OK | 275 | ||
| linux-release-x86_64 | NOTE | 327 | ||
| macos-release-arm64 | NOTE | 216 | ||
| macos-oldrel-arm64 | NOTE | 184 | ||
| windows-devel | NOTE | 217 | ||
| windows-release | NOTE | 250 | ||
| windows-oldrel | NOTE | 231 | ||
| wasm-release | OK | 201 |
Exports:add_edge_datacyto_visedge_mapping_infoexpand_KEGG_edgesexpand_KEGG_mappingsgenerate_mappingsget_fisher_infoget_graph_objectget_KGMLKEGG_lincskeggerize_edgesKL_comparenode_mapping_infooverlap_infopath_genes_by_cell_typerefine_mappingstidy_edgetoCytoscape
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIfastmapgenericsgluegraphgtoolshgu133a.dbhttrigraphIRangesjsonliteKEGGgraphKEGGRESTKOdatalatticelifecyclemagrittrMatrixmemoisemimeopensslorg.Hs.eg.dbpkgconfigplyrpngR6RcppRCurlRgraphvizRJSONIOrlangRSQLiteS4VectorsSeqinfosysvctrsXMLXVector
