Package: KEGGlincs 1.33.0
Shana White
KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data
See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.
Authors:
KEGGlincs_1.33.0.tar.gz
KEGGlincs_1.33.0.zip(r-4.5)KEGGlincs_1.33.0.zip(r-4.4)KEGGlincs_1.33.0.zip(r-4.3)
KEGGlincs_1.33.0.tgz(r-4.4-any)KEGGlincs_1.33.0.tgz(r-4.3-any)
KEGGlincs_1.33.0.tar.gz(r-4.5-noble)KEGGlincs_1.33.0.tar.gz(r-4.4-noble)
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KEGGlincs.pdf |KEGGlincs.html✨
KEGGlincs/json (API)
NEWS
| # Install 'KEGGlincs' in R: |
| install.packages('KEGGlincs', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:KEGGlincs-1.33.0(bioc 3.21)KEGGlincs-1.32.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
networkinferencegeneexpressiondatarepresentationthirdpartyclientcellbiologygraphandnetworkpathwayskeggnetwork
Last updated 2 months agofrom:ead0a3386f. Checks:OK: 1 NOTE: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 03 2024 |
| R-4.5-win | NOTE | Dec 03 2024 |
| R-4.5-linux | NOTE | Dec 03 2024 |
| R-4.4-win | NOTE | Dec 03 2024 |
| R-4.4-mac | NOTE | Dec 03 2024 |
| R-4.3-win | NOTE | Dec 03 2024 |
| R-4.3-mac | NOTE | Dec 03 2024 |
Exports:add_edge_datacyto_visedge_mapping_infoexpand_KEGG_edgesexpand_KEGG_mappingsgenerate_mappingsget_fisher_infoget_graph_objectget_KGMLKEGG_lincskeggerize_edgesKL_comparenode_mapping_infooverlap_infopath_genes_by_cell_typerefine_mappingstidy_edgetoCytoscape
Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIfastmapgenericsGenomeInfoDbGenomeInfoDbDatagluegraphgtoolshgu133a.dbhttrigraphIRangesjsonliteKEGGgraphKEGGRESTKOdatalatticelifecyclemagrittrMatrixmemoisemimeopensslorg.Hs.eg.dbpkgconfigplogrplyrpngR6RcppRCurlRgraphvizRJSONIOrlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLXVectorzlibbioc
