Package: KEGGlincs 1.31.0

Shana White

KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data

See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.

Authors:Shana White

KEGGlincs_1.31.0.tar.gz
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KEGGlincs.pdf |KEGGlincs.html✨
KEGGlincs/json (API)
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On BioConductor:KEGGlincs-1.31.0(bioc 3.20)KEGGlincs-1.30.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

18 exports 0.82 score 55 dependencies

Last updated 2 months agofrom:40748de671

Exports:add_edge_datacyto_visedge_mapping_infoexpand_KEGG_edgesexpand_KEGG_mappingsgenerate_mappingsget_fisher_infoget_graph_objectget_KGMLKEGG_lincskeggerize_edgesKL_comparenode_mapping_infooverlap_infopath_genes_by_cell_typerefine_mappingstidy_edgetoCytoscape

Dependencies:AnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64bitopsblobcachemclicpp11crayoncurlDBIfastmapGenomeInfoDbGenomeInfoDbDatagluegraphgtoolshgu133a.dbhttrigraphIRangesjsonliteKEGGgraphKEGGRESTKOdatalatticelifecyclemagrittrMatrixmemoisemimeopensslorg.Hs.eg.dbpkgconfigplogrplyrpngR6RcppRCurlRgraphvizRJSONIOrlangRSQLiteS4VectorssysUCSC.utilsvctrsXMLXVectorzlibbioc