Package: KEGGREST 1.47.0
Bioconductor Package Maintainer
KEGGREST: Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see <https://www.kegg.jp/kegg/rest/>). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.
Authors:
KEGGREST_1.47.0.tar.gz
KEGGREST_1.47.0.zip(r-4.5)KEGGREST_1.47.0.zip(r-4.4)KEGGREST_1.47.0.zip(r-4.3)
KEGGREST_1.47.0.tgz(r-4.5-any)KEGGREST_1.47.0.tgz(r-4.4-any)KEGGREST_1.47.0.tgz(r-4.3-any)
KEGGREST_1.47.0.tar.gz(r-4.5-noble)KEGGREST_1.47.0.tar.gz(r-4.4-noble)
KEGGREST_1.47.0.tgz(r-4.4-emscripten)KEGGREST_1.47.0.tgz(r-4.3-emscripten)
KEGGREST.pdf |KEGGREST.html✨
KEGGREST/json (API)
NEWS
| # Install 'KEGGREST' in R: |
| install.packages('KEGGREST', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bioconductor/keggrest/issues
On BioConductor:KEGGREST-1.47.0(bioc 3.21)KEGGREST-1.46.0(bioc 3.20)
annotationpathwaysthirdpartyclientkeggbioconductor-packagecore-package
Last updated 4 months agofrom:388585c0a8. Checks:4 OK, 4 ERROR. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 27 2025 |
| R-4.5-win | ERROR | Feb 27 2025 |
| R-4.5-mac | OK | Feb 27 2025 |
| R-4.5-linux | OK | Feb 27 2025 |
| R-4.4-win | OK | Feb 27 2025 |
| R-4.4-mac | ERROR | Feb 27 2025 |
| R-4.3-win | ERROR | Feb 27 2025 |
| R-4.3-mac | ERROR | Feb 27 2025 |
Exports:color.pathway.by.objectskeggCompoundskeggConvkeggFindkeggGetkeggInfokeggLinkkeggListlistDatabasesmark.pathway.by.objects
Dependencies:askpassBiocGenericsBiostringscrayoncurlgenericsGenomeInfoDbGenomeInfoDbDatahttrIRangesjsonlitemimeopensslpngR6S4VectorssysUCSC.utilsXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get list of compounds IDs for pathway | keggCompounds |
| Convert KEGG identifiers to/from outside identifiers | bconv conv keggConv |
| Finds entries with matching query keywords or other query data in a given database | keggFind |
| Retrieves given database entries | keggGet |
| Displays the current statistics of a given database | info keggInfo |
| Find related entries by using database cross-references. | keggLink link |
| Returns a list of entry identifiers and associated definition for a given database or a given set of database entries. | keggList |
| Lists the KEGG databases which may be searched. | listDatabases |
| Client-side interface to obtain an url for a KEGG pathway diagram with a given set of genes marked | color.pathway.by.objects mark.pathway.by.objects |
