Package: InteractiveComplexHeatmap 1.21.0

Zuguang Gu

InteractiveComplexHeatmap: Make Interactive Complex Heatmaps

This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.

Authors:Zuguang Gu [aut, cre]

# Install 'InteractiveComplexHeatmap' in R:

install.packages('InteractiveComplexHeatmap', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jokergoo/interactivecomplexheatmap/issues

Datasets:

rand_mat - A random matrix

On BioConductor:InteractiveComplexHeatmap-1.21.0(bioc 3.24)InteractiveComplexHeatmap-1.20.0(bioc 3.23)

software visualization sequencing interactive-heatmaps

8.82 score 141 stars 4 packages 185 scripts 1.0k downloads 25 exports 73 dependencies

Last updated from:9dcbc58b8d. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	270
linux-devel-x86_64	NOTE	357
source / vignettes	OK	423
linux-release-x86_64	NOTE	372
macos-release-arm64	NOTE	167
macos-oldrel-arm64	NOTE	125
windows-devel	NOTE	257
windows-release	NOTE	191
windows-oldrel	NOTE	244
wasm-release	OK	297

Exports:all_column_indices all_row_indices getPositionFromBrush getPositionFromClick getPositionFromDblclick getPositionFromHover HeatmapInfoOutput ht_shiny htPositionsOnDevice htShiny htShinyExample interactivate interactivate.DESeqDataSet interactivate.kde interactivateDensity2D InteractiveComplexHeatmapModal InteractiveComplexHeatmapOutput InteractiveComplexHeatmapWidget is_in_sub_heatmap makeInteractiveComplexHeatmap originalHeatmapOutput record_observation selectArea selectPosition subHeatmapOutput

Dependencies:base64enc BiocGenerics bslib cachem circlize cli clisymbols clue cluster codetools colorspace commonmark ComplexHeatmap cpp11 crayon digest doParallel evaluate farver fastmap fontawesome foreach fs generics GetoptLong GlobalOptions glue highr htmltools httpuv IRanges iterators jquerylib jsonlite kableExtra knitr labeling later lifecycle magrittr matrixStats memoise mime otel png promises R6 rappdirs RColorBrewer Rcpp rjson rlang rmarkdown rstudioapi S4Vectors sass scales shape shiny sourcetools stringi stringr svglite systemfonts textshaping tinytex vctrs viridisLite withr xfun xml2 xtable yaml

The InteractiveComplexHeatmap package

Rendered fromInteractiveComplexHeatmap.Rmdusingknitr::rmarkdown

Last update: 2024-02-27
Started: 2020-12-10

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Get all column indicies from the selected data frame	all_column_indices
Get all row indicies from the selected data frame	all_row_indices
Get the position of the brushed area on the heatmap image	getPositionFromBrush
Get the position of clicked point on the heatmap image	getPositionFromClick
Get the position of double clicked point on the heatmap image	getPositionFromDblclick
Get the position of hovered point on the heatmap image	getPositionFromHover
UI for the output	HeatmapInfoOutput
Interactive heatmaps as a Shiny app	ht_shiny
Get heatmap positions on the graphics device	htPositionsOnDevice
Interactive heatmaps as a Shiny app	htShiny
Examples of interactive complex heatmaps	htShinyExample
Generic function for interactivate an object in an interactive Shiny app	interactivate
Visualize DESeq2 result in an interactive Shiny app	interactivate.DESeqDataSet
Interactive Shiny application for 2D density distribution	interactivate.kde
Interactive Shiny application for 2D density distribution	interactivateDensity2D
Interactive complex heatmap modal dialog	InteractiveComplexHeatmapModal
UI for the interactive complex heatmaps	InteractiveComplexHeatmapOutput
Interactive complex heatmap widget	InteractiveComplexHeatmapWidget
Test whether it is in sub heatmap	is_in_sub_heatmap
Process heatmaps on the sever side	makeInteractiveComplexHeatmap
UI for the original heatmap	originalHeatmapOutput
A random matrix	rand_mat
Record the observation object	record_observation
Select an area in the heatmap	selectArea
Select a position in the heatmap	selectPosition
UI for the sub-heatmaps	subHeatmapOutput