{ "_id": "6a1acb511d7bb097a09ddf6b", "Package": "InteractiveComplexHeatmap", "Type": "Package", "Title": "Make Interactive Complex Heatmaps", "Version": "1.21.0", "Date": "2025-01-30", "Authors@R": "person(\"Zuguang\", \"Gu\", email = \"guzuguang@suat-sz.edu.cn\", role = c(\"aut\", \"cre\"),\ncomment = c('ORCID'=\"0000-0002-7395-8709\"))", "VignetteBuilder": "knitr", "Description": "This package can easily make heatmaps which are produced\nby the ComplexHeatmap package into interactive applications. It\nprovides two types of interactivities: 1. on the interactive\ngraphics device, and 2. on a Shiny app. It also provides\nfunctions for integrating the interactive heatmap widgets for\nmore complex Shiny app development.", "biocViews": "Software, Visualization, Sequencing", "URL": "https://github.com/jokergoo/InteractiveComplexHeatmap", "BugReports": "https://github.com/jokergoo/InteractiveComplexHeatmap/issues", "License": "MIT + file LICENSE", "Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev\nlibfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev\nlibuv1-dev libxml2-dev perl zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:54:48 UTC", "RemoteUrl": "https://github.com/bioc/InteractiveComplexHeatmap", "RemoteRef": "HEAD", "RemoteSha": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:00:37 UTC", "User": "root" }, "Author": "Zuguang Gu [aut, cre] (ORCID: )", "Maintainer": "Zuguang Gu ", "MD5sum": "d919d83b6f6f74d83a186a51c97166ca", "_user": "bioc", "_type": "src", "_file": "InteractiveComplexHeatmap_1.21.0.tar.gz", "_fileid": "a1881c802c49abd32e80ebcea1ad0eb6945d3e0361e905276f841ca526cd5d4f", "_filesize": 429015, "_sha256": "a1881c802c49abd32e80ebcea1ad0eb6945d3e0361e905276f841ca526cd5d4f", "_created": "2026-05-30T08:00:37.000Z", "_published": "2026-05-30T11:34:41.076Z", "_jobs": [ { "job": 78635192960, "time": 270, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306694316" }, { "job": 78635192962, "time": 357, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7306702873" }, { "job": 78635192963, "time": 372, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7306704279" }, { "job": 78635192991, "time": 125, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7307874881" }, { "job": 78635192971, "time": 167, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7307878285" }, { "job": 78634813994, "time": 423, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306668037" }, { "job": 78635192995, "time": 297, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306697035" }, { "job": 78635192979, "time": 257, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7306693219" }, { "job": 78635192988, "time": 244, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7306691972" }, { "job": 78635192990, "time": 191, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7306686983" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/InteractiveComplexHeatmap", "_commit": { "id": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380888 }, "_maintainer": { "name": "Zuguang Gu", "email": "guzuguang@suat-sz.edu.cn", "login": "jokergoo", "description": "A bioinformagician\n", "uuid": 449218, "orcid": "0000-0002-7395-8709" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "ComplexHeatmap", "version": ">= 2.11.0", "role": "Depends" }, { "package": "grDevices", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "shiny", "role": "Imports" }, { "package": "grid", "role": "Imports" }, { "package": "GetoptLong", "role": "Imports" }, { "package": "S4Vectors", "version": ">= 0.26.1", "role": "Imports" }, { "package": "digest", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "kableExtra", "version": ">= 1.3.1", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "svglite", "role": "Imports" }, { "package": "htmltools", "role": "Imports" }, { "package": "clisymbols", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "RColorBrewer", "role": "Imports" }, { "package": "fontawesome", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "EnrichedHeatmap", "role": "Suggests" }, { "package": "GenomicRanges", "role": "Suggests" }, { "package": "data.table", "role": "Suggests" }, { "package": "circlize", "role": "Suggests" }, { "package": "GenomicFeatures", "role": "Suggests" }, { "package": "tidyverse", "role": "Suggests" }, { "package": "tidyHeatmap", "role": "Suggests" }, { "package": "cluster", "role": "Suggests" }, { "package": "org.Hs.eg.db", "role": "Suggests" }, { "package": "simplifyEnrichment", "role": "Suggests" }, { "package": "GO.db", "role": "Suggests" }, { "package": "SC3", "role": "Suggests" }, { "package": "GOexpress", "role": "Suggests" }, { "package": "SingleCellExperiment", "role": "Suggests" }, { "package": "scater", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" }, { "package": "pheatmap", "role": "Suggests" }, { "package": "airway", "role": "Suggests" }, { "package": "DESeq2", "role": "Suggests" }, { "package": "DT", "role": "Suggests" }, { "package": "cola", "role": "Suggests" }, { "package": "BiocManager", "role": "Suggests" }, { "package": "gridtext", "role": "Suggests" }, { "package": "HilbertCurve", "version": ">= 1.21.1", "role": "Suggests" }, { "package": "shinydashboard", "role": "Suggests" }, { "package": "SummarizedExperiment", "role": "Suggests" }, { "package": "pkgndep", "role": "Suggests" }, { "package": "ks", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 4, "_updates": [ { "week": "2026-05", "n": 1 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.21.0", "bioc": "3.24" }, { "branch": "release", "version": "1.20.0", "bioc": "3.23" } ], "_topics": [ "software", "visualization", "sequencing", "interactive-heatmaps" ], "_stars": 141, "_contributors": [ { "user": "jokergoo", "count": 415, "uuid": 449218 }, { "user": "jwokaty", "count": 18, "uuid": 1744257 }, { "user": "nturaga", "count": 12, "uuid": 2746443 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 1049, "source": "https://www.bioconductor.org/packages/stats/bioc/InteractiveComplexHeatmap" }, "_devurl": "https://github.com/jokergoo/interactivecomplexheatmap", "_searchresults": 185, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/InteractiveComplexHeatmap.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/jokergoo/interactivecomplexheatmap", "_realowner": "bioc", "_cranurl": false, "_exports": [ "all_column_indices", "all_row_indices", "getPositionFromBrush", "getPositionFromClick", "getPositionFromDblclick", "getPositionFromHover", "HeatmapInfoOutput", "ht_shiny", "htPositionsOnDevice", "htShiny", "htShinyExample", "interactivate", "interactivate.DESeqDataSet", "interactivate.kde", "interactivateDensity2D", "InteractiveComplexHeatmapModal", "InteractiveComplexHeatmapOutput", "InteractiveComplexHeatmapWidget", "is_in_sub_heatmap", "makeInteractiveComplexHeatmap", "originalHeatmapOutput", "record_observation", "selectArea", "selectPosition", "subHeatmapOutput" ], "_datasets": [ { "name": "rand_mat", "title": "A random matrix", "object": "rand_mat", "file": "rand_mat.rda", "class": [ "matrix", "array" ], "fields": [ "C1", "C2", "C3", "C4", "C5", "C6", "C7", "C8", "C9", "C10", "C11", "C12", "C13", "C14", "C15", "C16", "C17", "C18", "C19", "C20", "C21", "C22", "C23", "C24", "C25", "C26", "C27", "C28", "C29", "C30", "C31", "C32", "C33", "C34", "C35", "C36", "C37", "C38", "C39", "C40", "C41", "C42", "C43", "C44", "C45", "C46", "C47", "C48", "C49", "C50", "C51", "C52", "C53", "C54", "C55", "C56", "C57", "C58", "C59", "C60" ], "rows": 60, "table": true, "tojson": true } ], "_help": [ { "page": "all_column_indices", "title": "Get all column indicies from the selected data frame", "topics": [ "all_column_indices" ] }, { "page": "all_row_indices", "title": "Get all row indicies from the selected data frame", "topics": [ "all_row_indices" ] }, { "page": "getPositionFromBrush", "title": "Get the position of the brushed area on the heatmap image", "topics": [ "getPositionFromBrush" ] }, { "page": "getPositionFromClick", "title": "Get the position of clicked point on the heatmap image", "topics": [ "getPositionFromClick" ] }, { "page": "getPositionFromDblclick", "title": "Get the position of double clicked point on the heatmap image", "topics": [ "getPositionFromDblclick" ] }, { "page": "getPositionFromHover", "title": "Get the position of hovered point on the heatmap image", "topics": [ "getPositionFromHover" ] }, { "page": "HeatmapInfoOutput", "title": "UI for the output", "topics": [ "HeatmapInfoOutput" ] }, { "page": "ht_shiny", "title": "Interactive heatmaps as a Shiny app", "topics": [ "ht_shiny" ] }, { "page": "htPositionsOnDevice", "title": "Get heatmap positions on the graphics device", "topics": [ "htPositionsOnDevice" ] }, { "page": "htShiny", "title": "Interactive heatmaps as a Shiny app", "topics": [ "htShiny" ] }, { "page": "htShinyExample", "title": "Examples of interactive complex heatmaps", "topics": [ "htShinyExample" ] }, { "page": "interactivate", "title": "Generic function for interactivate an object in an interactive Shiny app", "topics": [ "interactivate" ] }, { "page": "interactivate.DESeqDataSet", "title": "Visualize DESeq2 result in an interactive Shiny app", "topics": [ "interactivate.DESeqDataSet" ] }, { "page": "interactivate.kde", "title": "Interactive Shiny application for 2D density distribution", "topics": [ "interactivate.kde" ] }, { "page": "interactivateDensity2D", "title": "Interactive Shiny application for 2D density distribution", "topics": [ "interactivateDensity2D" ] }, { "page": "InteractiveComplexHeatmapModal", "title": "Interactive complex heatmap modal dialog", "topics": [ "InteractiveComplexHeatmapModal" ] }, { "page": "InteractiveComplexHeatmapOutput", "title": "UI for the interactive complex heatmaps", "topics": [ "InteractiveComplexHeatmapOutput" ] }, { "page": "InteractiveComplexHeatmapWidget", "title": "Interactive complex heatmap widget", "topics": [ "InteractiveComplexHeatmapWidget" ] }, { "page": "is_in_sub_heatmap", "title": "Test whether it is in sub heatmap", "topics": [ "is_in_sub_heatmap" ] }, { "page": "makeInteractiveComplexHeatmap", "title": "Process heatmaps on the sever side", "topics": [ "makeInteractiveComplexHeatmap" ] }, { "page": "originalHeatmapOutput", "title": "UI for the original heatmap", "topics": [ "originalHeatmapOutput" ] }, { "page": "rand_mat", "title": "A random matrix", "topics": [ "rand_mat" ] }, { "page": "record_observation", "title": "Record the observation object", "topics": [ "record_observation" ] }, { "page": "selectArea", "title": "Select an area in the heatmap", "topics": [ "selectArea" ] }, { "page": "selectPosition", "title": "Select a position in the heatmap", "topics": [ "selectPosition" ] }, { "page": "subHeatmapOutput", "title": "UI for the sub-heatmaps", "topics": [ "subHeatmapOutput" ] } ], "_readme": "https://github.com/bioc/InteractiveComplexHeatmap/raw/HEAD/README.md", "_rundeps": [ "base64enc", "BiocGenerics", "bslib", "cachem", "circlize", "cli", "clisymbols", "clue", "cluster", "codetools", "colorspace", "commonmark", "ComplexHeatmap", "cpp11", "crayon", "digest", "doParallel", "evaluate", "farver", "fastmap", "fontawesome", "foreach", "fs", "generics", "GetoptLong", "GlobalOptions", "glue", "highr", "htmltools", "httpuv", "IRanges", "iterators", "jquerylib", "jsonlite", "kableExtra", "knitr", "labeling", "later", "lifecycle", "magrittr", "matrixStats", "memoise", "mime", "otel", "png", "promises", "R6", "rappdirs", "RColorBrewer", "Rcpp", "rjson", "rlang", "rmarkdown", "rstudioapi", "S4Vectors", "sass", "scales", "shape", "shiny", "sourcetools", "stringi", "stringr", "svglite", "systemfonts", "textshaping", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "xml2", "xtable", "yaml" ], "_vignettes": [ { "source": "InteractiveComplexHeatmap.Rmd", "filename": "InteractiveComplexHeatmap.html", "title": "The InteractiveComplexHeatmap package", "author": "Zuguang Gu (z.gu@dkfz.de)", "engine": "knitr::rmarkdown", "headings": [], "created": "2020-12-10 12:29:13", "modified": "2024-02-27 14:31:07", "commits": 28 } ], "_score": 8.817377570963558, "_indexed": true, "_nocasepkg": "interactivecomplexheatmap", "_universes": [ "bioc", "jokergoo" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.21.0", "date": "2026-05-30T08:06:01.000Z", "distro": "noble", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "ba52ccf1a764df89355a71782e7ad2a30bae08e9afba39ba01bcb3ce40439209", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.6.0", "os": "linux", "version": "1.21.0", "date": "2026-05-30T08:06:10.000Z", "distro": "noble", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "5efcfff4493e517671ba90e8315f2ee5b41d4dd9a11914814ff6768319bc0647", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.5.3", "os": "mac", "version": "1.21.0", "date": "2026-05-30T11:33:02.000Z", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "9d0ded3d5839556e60a17729884c95ff1cd01f0d1122709d2bc54eaa3079abfd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.6.0", "os": "mac", "version": "1.21.0", "date": "2026-05-30T11:33:26.000Z", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "edf78509cc835aa2ca5628032a19ca0873e753fd003245a1c5c79c759f3232e8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.6.0", "os": "wasm", "version": "1.21.0", "date": "2026-05-30T08:06:02.000Z", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "42cdee1882912215daa796bff32a68627eb4a55e137a39f905c03ad20823b2e5", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.7.0", "os": "win", "version": "1.21.0", "date": "2026-05-30T08:04:03.000Z", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "290916a5820403c7fff54934aa37fe3602324f06cbe9d3d06a4e143f66f7f342", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.5.3", "os": "win", "version": "1.21.0", "date": "2026-05-30T08:03:53.000Z", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "31dff7fd262d1dd7214001895075308cfbf45b0277e3c739a3f56b16acf2121c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" }, { "r": "4.6.0", "os": "win", "version": "1.21.0", "date": "2026-05-30T08:03:03.000Z", "commit": "9dcbc58b8d026b8af8c0d63180059eb1e4e27a8a", "fileid": "4ce35c569e38064e04a0733ca9cfb1a2d0569f31c0330c9863c5af2c9acf99a0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26678568456" } ] }