Package: Informeasure 1.17.0

Chu Pan

Informeasure: R implementation of information measures

This package consolidates a comprehensive set of information measurements, encompassing mutual information, conditional mutual information, interaction information, partial information decomposition, and part mutual information.

Authors:Chu Pan [aut, cre]

Informeasure_1.17.0.tar.gz
Informeasure_1.17.0.zip(r-4.5)Informeasure_1.17.0.zip(r-4.4)Informeasure_1.17.0.zip(r-4.3)
Informeasure_1.17.0.tgz(r-4.4-any)Informeasure_1.17.0.tgz(r-4.3-any)
Informeasure_1.17.0.tar.gz(r-4.5-noble)Informeasure_1.17.0.tar.gz(r-4.4-noble)
Informeasure_1.17.0.tgz(r-4.4-emscripten)Informeasure_1.17.0.tgz(r-4.3-emscripten)
Informeasure.pdf |Informeasure.html✨
Informeasure/json (API)
NEWS

# Install 'Informeasure' in R:
install.packages('Informeasure', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/chupan1218/informeasure/issues

On BioConductor:Informeasure-1.15.0(bioc 3.20)Informeasure-1.14.0(bioc 3.19)

geneexpressionnetworkinferencenetworksoftware

4.65 score 3 stars 4 scripts 116 downloads 19 exports 1 dependencies

Last updated 26 days agofrom:b93e002ef7. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 30 2024
R-4.5-winOKOct 30 2024
R-4.5-linuxOKOct 30 2024
R-4.4-winOKOct 30 2024
R-4.4-macOKOct 30 2024
R-4.3-winOKOct 30 2024
R-4.3-macOKOct 30 2024

Exports:CMI.measureCMI.plugindiscretize1Ddiscretize1d.uniform_frequencydiscretize1d.uniform_widthdiscretize2Ddiscretize2d.uniform_frequencydiscretize2d.uniform_widthdiscretize3Ddiscretize3d.uniform_frequencydiscretize3d.uniform_widthII.measureII.pluginMI.measureMI.pluginPID.measurePID.pluginPMI.measurePMI.plugin

Dependencies:entropy

Informeasure: a tool to quantify nonlinear dependence between variables in biological regulatory networks from an information theory perspective

//\ Chu PAN //\ College of Computer Science and Electronic Engineering, Hunan University

Rendered fromInformeasure.Rmdusingknitr::rmarkdownon Oct 30 2024.

Last update: 2024-02-13
Started: 2020-08-03

Readme and manuals

Help Manual

Help pageTopics
A comprehensive function for estimating conditional mutual informationCMI.measure
A plug-in calculator for evaluating conditional mutual informationCMI.plugin
Discretize one-dimensional continuous data into binsdiscretize1D
Discretize a set of continuous data into 1-dimensional bins by uniform frequencydiscretize1d.uniform_frequency
Discretize a set of continuous data into 1-dimensional bins by "uniform width" methoddiscretize1d.uniform_width
Discretize 2-dimensional continuous data into binsdiscretize2D
Discretize two sets of continuous data into 2-dimensional bins by uniform frequencydiscretize2d.uniform_frequency
Discretize two sets of continuous data into 2-dimensional bins by "uniform width" methoddiscretize2d.uniform_width
Discretize 3-dimensional continuous data into binsdiscretize3D
Discretize three sets of continuous data into 3-dimensional bins by uniform frequencydiscretize3d.uniform_frequency
Discretize three sets of continuous data into 3-dimensional bins by "uniform width" methoddiscretize3d.uniform_width
A comprehensive function for evaluating interaction informationII.measure
A plug-in calculator for evaluating the interaction informationII.plugin
A comprehensive function for evaluating mutual informationMI.measure
A plug-in calculator for evaluating mutual informationMI.plugin
A comprehensive function for evaluating the partial information decompositionPID.measure
A plug-in calculator for evaluating partial information decompositionPID.plugin
A comprehensive function for evaluating part mutual informationPMI.measure
A plug-in calculator for evaluating the part mutual informationPMI.plugin