Package: ISoLDE 1.33.0

Christelle Reynès

ISoLDE: Integrative Statistics of alleLe Dependent Expression

This package provides ISoLDE a new method for identifying imprinted genes. This method is dedicated to data arising from RNA sequencing technologies. The ISoLDE package implements original statistical methodology described in the publication below.

Authors:Christelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem Kister [aut]

ISoLDE_1.33.0.tar.gz
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ISoLDE.pdf |ISoLDE.html✨
ISoLDE/json (API)
NEWS

# Install 'ISoLDE' in R:
install.packages('ISoLDE', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • openmp– GCC OpenMP (GOMP) support library
Datasets:
  • filteredASRcounts - NORMALIZED AND FILTERED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES
  • normASRcounts - NORMALIZED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES
  • rawASRcounts - RAW ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES
  • target - METADATA ABOUT THE ASR COUNT DATA.

On BioConductor:ISoLDE-1.33.0(bioc 3.20)ISoLDE-1.32.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

5 exports 0.82 score 0 dependencies

Last updated 2 months agofrom:f7989612ca

Exports:filterTisolde_testreadNormInputreadRawInputreadTarget

Dependencies: