{ "_id": "6acbcd66fe5cc25786e934e0", "Package": "ISoLDE", "Type": "Package", "Title": "Integrative Statistics of alleLe Dependent Expression", "Version": "1.41.0", "Date": "2015-10-29", "Authors@R": "c( person(\"Christelle\", \"Reynès\", email =\n\"christelle.reynes@igf.cnrs.fr\", role = c(\"aut\",\"cre\")),\nperson(\"Marine\", \"Rohmer\", email = \"marine.rohmer@mgx.cnrs.fr\",\nrole = c(\"aut\")), person(\"Guilhem\", \"Kister\", email =\n\"guilhem.kister@umontpellier.fr\", role = c (\"aut\")))", "Description": "This package provides ISoLDE a new method for identifying\nimprinted genes. This method is dedicated to data arising from\nRNA sequencing technologies. The ISoLDE package implements\noriginal statistical methodology described in the publication\nbelow.", "Encoding": "UTF-8", "License": "GPL (>= 2.0)", "URL": "www.r-project.org", "LazyData": "no", "NeedsCompilation": "yes", "Author": "Christelle Reynès [aut, cre], Marine Rohmer [aut], Guilhem\nKister [aut]", "Maintainer": "Christelle Reynès ", "biocViews": "ImmunoOncology, GeneExpression, Transcription,\nGeneSetEnrichment, Genetics, Sequencing, RNASeq,\nMultipleComparison, SNP, GeneticVariability, Epigenetics,\nMathematicalBiology, GeneRegulation", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:43:05 UTC", "RemoteUrl": "https://github.com/bioc/ISoLDE", "RemoteRef": "HEAD", "RemoteSha": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "Packaged": { "Date": "2026-10-11 10:50:31 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "ISoLDE_1.41.0.tar.gz", "_fileid": "https://r2.ropensci.org/023ab4510530a7ffa0d053176be502bdd3b8c230d3f0480ea29e945a2d58ff77", "_filesize": 1418745, "_sha256": "023ab4510530a7ffa0d053176be502bdd3b8c230d3f0480ea29e945a2d58ff77", "_expires": "2027-01-19T11:04:18.000Z", "_created": "2026-10-11T10:50:31.000Z", "_published": "2026-10-11T17:54:46.865Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 4, "note": 11 }, "_upstream": "https://github.com/bioc/ISoLDE", "_commit": { "id": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380185 }, "_maintainer": { "name": "Christelle Reynès", "email": "christelle.reynes@igf.cnrs.fr" }, "_distro": "resolute", "_jobs": [ { "job": 114534596171, "time": 118, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11699324791" }, { "job": 114534596358, "time": 116, "config": "linux-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "11700041901" }, { "job": 114534596323, "time": 231, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11700101917" }, { "job": 114534596249, "time": 115, "config": "linux-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11699971967" }, { "job": 114534596143, "time": 215, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11700081836" }, { "job": 114534596381, "time": 110, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "11700930175" }, { "job": 114534596490, "time": 299, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11700450379" }, { "job": 114534596496, "time": 140, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11700830325" }, { "job": 114534595868, "time": 196, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11699873787" }, { "job": 114534595157, "time": 144, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11699703696" }, { "job": 114534596349, "time": 64, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11699996801" }, { "job": 114534595206, "time": 230, "config": "windows-devel-arm64", "r": "4.7.0", "check": "WARNING", "artifact": "11710752126" }, { "job": 114534596002, "time": 137, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "11700001959" }, { "job": 114534596326, "time": 127, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11699818792" }, { "job": 114534595146, "time": 227, "config": "windows-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11710917020" }, { "job": 114534596505, "time": 105, "config": "windows-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11699374784" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.3.0", "role": "Depends" }, { "package": "graphics", "role": "Depends" }, { "package": "grDevices", "role": "Depends" }, { "package": "stats", "role": "Depends" }, { "package": "utils", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.41.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.40.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "immunooncology", "geneexpression", "transcription", "genesetenrichment", "genetics", "sequencing", "rnaseq", "multiplecomparison", "snp", "geneticvariability", "epigenetics", "mathematicalbiology", "generegulation", "openmp" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 365, "source": "https://www.bioconductor.org/packages/stats/bioc/ISoLDE" }, "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ISoLDE.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "filterT", "isolde_test", "readNormInput", "readRawInput", "readTarget" ], "_datasets": [ { "name": "filteredASRcounts", "title": "NORMALIZED AND FILTERED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES", "object": "filteredASRcounts", "file": "filteredASRcounts.rda", "class": [ "matrix", "array" ], "fields": [ "sample1", "sample2", "sample3", "sample4", "sample5", "sample6", "sample7", "sample1.1", "sample2.1", "sample3.1", "sample4.1", "sample5.5", "sample6.6", "sample7.7" ], "rows": 6062, "table": true, "tojson": true }, { "name": "normASRcounts", "title": "NORMALIZED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES", "object": "normASRcounts", "file": "normASRcounts.rda", "class": [ "matrix", "array" ], "fields": [ "sample1", "sample2", "sample3", "sample4", "sample5", "sample6", "sample7", "sample1.1", "sample2.1", "sample3.1", "sample4.1", "sample5.5", "sample6.6", "sample7.7" ], "rows": 8364, "table": true, "tojson": true }, { "name": "rawASRcounts", "title": "RAW ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES", "object": "rawASRcounts", "file": "rawASRcounts.rda", "class": [ "matrix", "array" ], "fields": [ "sample1", "sample2", "sample3", "sample4", "sample5", "sample6", "sample7", "sample1.1", "sample2.1", "sample3.1", "sample4.1", "sample5.5", "sample6.6", "sample7.7" ], "rows": 8364, "table": true, "tojson": true }, { "name": "target", "title": "METADATA ABOUT THE ASR COUNT DATA.", "object": "target", "file": "target.rda", "class": [ "data.frame" ], "fields": [ "sample", "parent", "strain" ], "rows": 14, "table": true, "tojson": true } ], "_help": [ { "page": "ISoLDE-package", "title": "INTEGRATIVE STATISTICS OF ALLELE DEPENDENT EXPRESSION", "topics": [ "ISoLDE-package", "ISoLDE" ] }, { "page": "filteredASRcounts", "title": "NORMALIZED AND FILTERED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES", "topics": [ "filteredASRcounts", "filteredASRcounts.rda" ] }, { "page": "filterT", "title": "FILTERING GENES BEFORE STATISTICAL ANALYSIS", "topics": [ "filterT" ] }, { "page": "isolde_test", "title": "Statistical analysis of Allele specific read (ASR) counts", "topics": [ "isolde_test" ] }, { "page": "normASRcounts", "title": "NORMALIZED ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES", "topics": [ "normASRcounts", "normASRcounts_file", "normASRcounts_file.txt" ] }, { "page": "rawASRcounts", "title": "RAW ALLELE SPECIFIC READ (ASR) COUNTS FOR AN EXPERIENCE WITH MORE THAN TWO REPLICATES", "topics": [ "rawASRcounts", "rawASRcounts_file", "rawASRcounts_file.txt" ] }, { "page": "readNormInput", "title": "READ THE NORMALIZED DATA FILE", "topics": [ "readNormInput" ] }, { "page": "readRawInput", "title": "READ THE RAW DATA FILE", "topics": [ "readRawInput" ] }, { "page": "readTarget", "title": "READ THE TARGET FILE", "topics": [ "readTarget" ] }, { "page": "target", "title": "METADATA ABOUT THE ASR COUNT DATA.", "topics": [ "target", "target_file", "target_file.txt" ] } ], "_rundeps": [], "_sysdeps": [ { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 2.3010299956639813, "_indexed": true, "_nocasepkg": "isolde", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.41.0", "date": "2026-10-11T10:52:02.000Z", "distro": "resolute", "arch": "aarch64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/88fa6a627c65898fcf7d1d39e05a204269a5fbf38d0ee90613c5c9e05945d911", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.7.0", "os": "linux", "version": "1.41.0", "date": "2026-10-11T10:53:45.000Z", "distro": "resolute", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/e0ec56a3673d53098f66f0f91e8ba5ced7421b1a30fda9909cdc45c82d296fcc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.1", "os": "linux", "version": "1.41.0", "date": "2026-10-11T10:52:07.000Z", "distro": "resolute", "arch": "aarch64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/a35e0479ff6818f9c9b032547f31f6a42a420330ae72b27b5092eb87797a18ff", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.1", "os": "linux", "version": "1.41.0", "date": "2026-10-11T10:53:23.000Z", "distro": "resolute", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/d74d8258c6bc0ade4b11276c2241f53ee3dfe3505ee7c13af3209e33dd3970b5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.5.3", "os": "mac", "version": "1.41.0", "date": "2026-10-11T11:02:39.000Z", "arch": "aarch64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/e10f7020b627a90283ff10c16d72a973de8c0613458d7557d868a04659ef72fe", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.5.3", "os": "mac", "version": "1.41.0", "date": "2026-10-11T10:54:01.000Z", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/be97ae1e99eded481492f7d30acf17f4aa3f1a0cc70e1f30d0257dfe5f2c23f6", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.1", "os": "mac", "version": "1.41.0", "date": "2026-10-11T11:02:55.000Z", "arch": "aarch64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/056bf64c503cd2cf23208dd68776a3a39576e1037b15d486a92020064a52dd01", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.1", "os": "mac", "version": "1.41.0", "date": "2026-10-11T10:54:55.000Z", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/e48f5883d7d6b6bb319a7c85ecadee7891df08d4ffa7c228107ddc04938103fc", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.0", "os": "wasm", "version": "1.41.0", "date": "2026-10-11T10:51:50.000Z", "arch": "emscripten", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/dff14da4732fee8dcadf3e2b1587fa7888d9c15946d2978e918ce2fc3a73bb24", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.7.0", "os": "win", "version": "1.41.0", "date": "2026-10-11T17:53:04.000Z", "arch": "aarch64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/2318a9720195be3f62367e3666141d7d76c4c6a34e2d150d0046fc9cb9131b29", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.7.0", "os": "win", "version": "1.41.0", "date": "2026-10-11T10:51:22.000Z", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/164d00a0f57761b0e2b86fbbb57788df80a5c6699e1f381c3c8a3cbe31337573", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.5.3", "os": "win", "version": "1.41.0", "date": "2026-10-11T10:51:34.000Z", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/50dda06b21661b84ff73f59bb18eb799a93dff685e78ac95ce1abcca9de5b021", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.1", "os": "win", "version": "1.41.0", "date": "2026-10-11T17:53:33.000Z", "arch": "aarch64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/18b80f245dd94095963cc2c395605f26db06533605096ec6baa38b2b727ce236", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" }, { "r": "4.6.1", "os": "win", "version": "1.41.0", "date": "2026-10-11T10:51:19.000Z", "arch": "x86_64", "commit": "d06bfdc444b0ab4671c4b0ab6ebe610fc875fc7c", "fileid": "https://r2.ropensci.org/87dd1062b5b5029f1e4a4c074c4357aeb072f554d5350e2252eca9d5e861f829", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38133236443" } ] }